RNA id: TU169151



Basic Information


Item Value
RNA id TU169151
length 1161
RNA type TUCP
GC content 0.45
exon number 3
gene id G134743
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11436379 ~ 11446163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTAATTGTGCACACGCTCCAGGTACACAGTGCGACAGAGACCTGCACAAAGAAGCAACACTGAAATCCACCGATTTCCCAGCCCAGAGAGCTGTACGATCAGACCCACAGATAGACTCACAGACCTGTTGGGTTAAGATGctcctcctgcagctgctgtgttGCCTGCTGACACTGAACACCCTGGAAGtgcctCTACCTGATCCTAAAACTCTGCAGGAAGTTAAGCTCCCCATCATAGGTAATGCACTCTGTGATAAAGTCTATGGTGGGATCAAATCAGAGATGGTATGTGCTGGGGATGGAGGAAAAGATACGTGCCAGGGTGACTCTGGGGGTCCTCTGGTCTGTAGAAAAAGGTTGGTGTCCTGGGTCCTGGTTGGGATCACGAGCTTTGGGGACGTCTGTGGAAAACCTAAATTCCCTGGCGTCTACACCCGGGTCTCCAGCTTCCGACGCTGGATAAAAAAGCACAGTGGGGTCTGAAGCACCTGGCTGAGGACAGCGACCCCTACCTGGCTGTCTGACTCACTGCACCCTGCTGCACCCAGATCTGATATCTGTACAGATCACCAGTTTATATCACCTGCACTGCCCCCCACTCCACCCCCTTTGTCCTAGTGTAATTATTACTGAGGGACTCATTATCTCATCTATTATATTCAAAATCAAAGTTGCATTATCGCTAAAGCATACACAGTACATTcaataacaatcaataacagAGATTAAGATACCTaatctatatataattagtagagtgtgttaaaatacatacatttaaaattagtttatatTTTGACACACCAAGAAGAATtctaaattaaagtgaaaagtgATAATAACAGACGATTatgaattacagtaatacaaCTTTTTTGGAGGGACTGTATTTCTGTGTTCATTCCTGAGGGctgccctgctctctcctctcccactgTGATATCAGCTGCTGCTCTTGGCTCTGCTCTGCTATGAGAGTTCAGTTGTACTGAGACTCTGCTGAACAGCTCAATAAAACTGCAAAGCATTCAAACTCCTGGTCTGGGGCTGCACTTATTTGATCAATTGTTTGGCTGATTAGATgtagaaataatatattcaatGGGATCTCTCAAAGCAGTGTCAGCAGTTTAAAGTAACAACAGATCAGCATCCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169092 lncRNA upstream 134314 11300334 ~ 11302065 (+) True G134698
TU169080 lncRNA upstream 202496 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 380695 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 453585 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 465291 10967276 ~ 10971088 (+) False G134615
TU169157 lncRNA downstream 57797 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 173014 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 265087 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 373094 11819257 ~ 11844832 (+) True G134779
TU169323 lncRNA downstream 470181 11916344 ~ 11917737 (+) False G134877
AMCG00012134 mRNA upstream 17597 11409444 ~ 11418782 (+) True AMCG00012134
AMCG00012138 mRNA upstream 31363 11403660 ~ 11405016 (+) True AMCG00012138
AMCG00012136 mRNA upstream 47617 11386573 ~ 11388762 (+) True AMCG00012136
AMCG00012128 mRNA upstream 53791 11360239 ~ 11382588 (+) True AMCG00012128
AMCG00012140 mRNA upstream 55607 11380073 ~ 11380772 (+) True AMCG00012140
AMCG00012142 mRNA downstream 19645 11465808 ~ 11469405 (+) True AMCG00012142
AMCG00012147 mRNA downstream 31729 11477892 ~ 11478122 (+) True AMCG00012147
AMCG00012146 mRNA downstream 47554 11493717 ~ 11509522 (+) True AMCG00012146
AMCG00012145 mRNA downstream 80722 11526885 ~ 11533796 (+) True AMCG00012145
AMCG00012144 mRNA downstream 173141 11619304 ~ 11625687 (+) True AMCG00012144
TU169087 other upstream 142480 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 145857 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 145857 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 505926 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 1118561 10303273 ~ 10317818 (+) True G134343
TU169350 other downstream 584734 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 726375 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 734898 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 745392 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 1120049 12566212 ~ 12716115 (+) False G135026

Expression Profile