RNA id: TU169157


Basic Information

Item Value
RNA id TU169157
length 351
lncRNA type intronic
GC content 0.49
exon number 2
gene id G134749
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11503960 ~ 11504648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGCTAGACCTTCATTAGTCTCTGGACTGGCTCTGCAGGTCTGTGGAAGGCCTCTCTCAGAGCAGCatCTTAAAACTTCTCCCGTCTGTCCTTGTCCCCTTTCCAGTGGTTGTAGACTTTGTCCAGATAGGGCCCTCTGCTTGTGTAGACTGGATTCTGTGACGTCctctaggaccaaaggaaaggatccaagtgcaggcttttagagttgaagcagataatccaataagggcaaaacgagagagcataaacagggacagtccaggtcaaacgatcaagcgaacaggctagtagggagatccgaaaggggtaaacgagagaaggaagcaagaggtcaaaaatacacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169092 lncRNA upstream 201895 11300334 ~ 11302065 (+) True G134698
TU169080 lncRNA upstream 270077 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 448276 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 521166 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 532872 10967276 ~ 10971088 (+) False G134615
TU169172 lncRNA downstream 114529 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 206602 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 314609 11819257 ~ 11844832 (+) True G134779
TU169323 lncRNA downstream 411696 11916344 ~ 11917737 (+) False G134877
TU169322 lncRNA downstream 411706 11916354 ~ 11917737 (+) False G134877
AMCG00012147 mRNA upstream 25838 11477892 ~ 11478122 (+) True AMCG00012147
AMCG00012142 mRNA upstream 34555 11465808 ~ 11469405 (+) True AMCG00012142
AMCG00012135 mRNA upstream 58472 11440512 ~ 11445488 (+) True AMCG00012135
AMCG00012137 mRNA upstream 63450 11436517 ~ 11440510 (+) True AMCG00012137
AMCG00012134 mRNA upstream 85178 11409444 ~ 11418782 (+) True AMCG00012134
AMCG00012145 mRNA downstream 22237 11526885 ~ 11533796 (+) True AMCG00012145
AMCG00012144 mRNA downstream 114656 11619304 ~ 11625687 (+) True AMCG00012144
AMCG00012143 mRNA downstream 152741 11657389 ~ 11671798 (+) True AMCG00012143
AMCG00012148 mRNA downstream 175662 11680310 ~ 11682928 (+) True AMCG00012148
AMCG00012153 mRNA downstream 186075 11690723 ~ 11700382 (+) True AMCG00012153
TU169151 other upstream 57797 11436379 ~ 11446163 (+) True G134743
TU169087 other upstream 210061 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 213438 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 213438 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 573507 10926606 ~ 10930453 (+) True G134613
TU169350 other downstream 526249 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 667890 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 676413 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 686907 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 1061564 12566212 ~ 12716115 (+) False G135026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_00785276_00797955.mRNA True 1226 mRNA 0.46 2 CI01000000 785254 ~ 798334 (-)