RNA id: TU169224


Basic Information

Item Value
RNA id TU169224
length 1504
RNA type TUCP
GC content 0.44
exon number 3
gene id G134803
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11330466 ~ 11386979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accaaacgagcacaatggggcgaatgaactcctctcgtttgtaaactttcatattttctcatgttcttaagTATCTTTATTAACCCCCCACCTCTATTTCTCCACTATTTCTCTAtccttctctctatctctctctctttctctctccagggAGACTCTGGGGGTCCCCTGATGTGCAAGCAGATTATATCAAAGCACACTGTCTGGTCCCAGGTCAGCATACTGGTCAACACGACAGCCGACAAGAGCACCCGCACCTCCCAGCCTAGGGAGTTCACCAAGATGTCTATGTTTGACAAGTTCCTGCAGGACAAGGTGGGCTCCTTCCTGCCCCTTATCACCAAGAACTTGGGGTGCACTTTCCACCACTCCGCCTCTGGTGCTGCCCTTCTGTTGGCCACACTCATTCCACTACTGGGCACCTGGTTCACCTCTCTGTGATCCACCCCCTGTAAACTGGGCCCTCCTGAGGGTCAACCCTAAGGTCAGTTGCATGAGCagcaacatcatcatcatcatcatcatcatcacggTCGCCGAGCCACTGCTGGACCAAGGCCTCCGCGAGACTCCCCCACTTGACCCTCTCGACTCCAGGACACTCCTCCTGCCTCCTCTTGTTCTCAGACACCTGTTAAATGACATTTGAGTTAAAATGTCTGGAAAGGGGGCTTGTTCTCAGGGTACTCCTTCACCGATGCCCCATGTCTCTGTTTGTATCTCTGCTCTTGTGTATTTTatctctgctctctctgcttCCCCATGCTTCCGTGTGTTGTTTGGAGTCATTTTTTTGTCACTCAAGCCCTTATGTATTGAATACCTTCACTATTCAGTGTTCAGCTTTTTTCAGCTTTTACTCAtcttgtagtagtagtagtagcagcagatGTAGTAGTACTGCTAGgccagatgcatttaaaatcacaacTGCCTTAAGCTCAGATGCAgtgttgatctgcatgaattcaaTTCATTATCTATGAATTGAATTAGTGCAAAGTgtcttattatttgtaattcactTAATACATTCACTGGAAGACAGTTTCTAAGGCTGTGTCAGTGACTTCAATGTCTTCAACTCTTCAATGAGGAGAACCTGAGATGCCCTGCTCCCCCACACTAGCACGCTGCCATGTCAGAGTGAATGCCATTTCATATTGCAATCACACACAAACGTGTCAGTTTAGCAGAACTGTAAATACACTTGATTTTTGGGGTTTTGTAATCTCAGAAATATTCATATGTGtgcatatgcatatgtataatgtgttttaagCACATGCATTCTATAATATGTAGTATTATTTAACATGACGTTTTATAGGCTACTGTGTTTAGGGCGTTGCCCACAGGCACTAACTGAAGACAGCTGCTGAACAAATGAAAGGGAAAGagtttatgaatgttttatagGTAAATATGGATTTTATAAGTTTGTCCTTTAGTTTCTTTTCTCTACCAGCACTGCCCCCTNNNNNNNNNNNgacatctgcgccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169027 lncRNA downstream 347675 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 359378 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 982741 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 1024439 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 1043337 10225627 ~ 10287129 (-) True G134443
TU169245 lncRNA upstream 8981 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 109696 11496675 ~ 11769509 (-) True G134817
TU169274 lncRNA upstream 173118 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 216544 11603523 ~ 11604157 (-) True G134844
TU169288 lncRNA upstream 272742 11659721 ~ 11660305 (-) True G134849
AMCG00012130 mRNA downstream 10718 11312924 ~ 11319748 (-) True AMCG00012130
AMCG00012133 mRNA downstream 29645 11298027 ~ 11300821 (-) True AMCG00012133
AMCG00012131 mRNA downstream 33363 11284737 ~ 11297103 (-) True AMCG00012131
AMCG00012124 mRNA downstream 47658 11274224 ~ 11282808 (-) True AMCG00012124
AMCG00012126 mRNA downstream 64897 11263489 ~ 11265569 (-) True AMCG00012126
AMCG00012141 mRNA upstream 149047 11536026 ~ 11540090 (-) True AMCG00012141
AMCG00012149 mRNA upstream 269097 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012154 mRNA upstream 389462 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012157 mRNA upstream 421020 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012156 mRNA upstream 456089 11843068 ~ 11866778 (-) True AMCG00012156
TU169020 other downstream 368595 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 518585 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1074428 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1079351 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 1085542 10244421 ~ 10244924 (-) True G134397
TU169384 other upstream 687025 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 732301 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 804576 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 815783 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 834226 12221205 ~ 12223185 (-) True G134981

Expression Profile