RNA id: TU169240


Basic Information

Item Value
RNA id TU169240
length 534
lncRNA type read_through
GC content 0.54
exon number 2
gene id G134817
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11496675 ~ 11769509 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGAATGCTTTGCAGTTTTATTGAGCTGTTCAGCAGAGTCCCAGTACAACTGATCTCTCACAGCAGAGCAGAGTCAAGAGCAGCAGCTGATATCAcagtgggagaggagagagcagggagaCCCTCAGGAATGAACAGAGAGTTGGATCTGGAGACACAGTGAacaagagatggagagaggaaaagagaagaacacaaaacaattgGACAGGGTGACATGGGGAGAGAGGATGGGACAGAAGAAAGAGTGCAGGTGATATAAACTGCTGGTCTGAACAGATATCAGATCTGGGAGCAGCAGAGCGTgcagtgagccagccagccagGTAGGGGGCGCTGTCCTCAGTAGGAGCCTCAGACACCACTGTGCTGCTTTATCCAGTGGCGGAAGCTGGAGACCCGGGTGTAGATACCAGGGGATCGGGGTTGAGCACAGCCCCTCCCAAAGCTGGTGATTCCAGCCAGGACCCATCGtctcctccttctcttcctACAGACCAGAGGCCCCCCAGAGTCAccctgtacagagaga

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169245 lncRNA downstream 95974 11395960 ~ 11400701 (-) True G134819
TU169223 lncRNA downstream 148865 11330466 ~ 11347810 (-) False G134803
TU169027 lncRNA downstream 513884 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 525587 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 1148950 10345062 ~ 10347725 (-) True G134402
TU169351 lncRNA upstream 244843 12014352 ~ 12017558 (-) True G134899
TU169392 lncRNA upstream 348831 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 497094 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 593026 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 797164 12566673 ~ 12589807 (-) True G135148
AMCG00012139 mRNA downstream 107941 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012132 mRNA downstream 145738 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012129 mRNA downstream 165394 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012130 mRNA downstream 176927 11312924 ~ 11319748 (-) True AMCG00012130
AMCG00012133 mRNA downstream 195854 11298027 ~ 11300821 (-) True AMCG00012133
AMCG00012154 mRNA upstream 6932 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012157 mRNA upstream 38490 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012156 mRNA upstream 73559 11843068 ~ 11866778 (-) True AMCG00012156
AMCG00012158 mRNA upstream 101728 11871237 ~ 11885827 (-) True AMCG00012158
AMCG00012160 mRNA upstream 120842 11890351 ~ 11896617 (-) True AMCG00012160
TU169224 other downstream 109696 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 534804 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 684794 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1240637 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1245560 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 304495 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 349771 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 422046 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 433253 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 451696 12221205 ~ 12223185 (-) True G134981

Expression Profile