RNA id: TU169296


Basic Information

Item Value
RNA id TU169296
length 273
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G134855
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11744894 ~ 11767954 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCCTCCATTATATTCCCCCAGCCTGTAGCCCAGCACTCCCAGGCTTTGCTGTATTCATCTTCGGGCCCAGCCAGGGTCACAGGTTTGATGTAATCATTGGTGGTCACTGTAGCGTTGAGCTCTATCAGTGCGATGTCGAAGCCTTTTTCGGCATCCGTATATTCCTCATGCATGATGACTTTATTCAAGGTGCGTCTCACTTCATGCTCACTGGGTTCATCCAGTGAGTGCGCCCCCAGGATCACCTCAGATTCCCACCACTTTAAGGGG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169288 lncRNA downstream 84589 11659721 ~ 11660305 (-) True G134849
TU169280 lncRNA downstream 140737 11603523 ~ 11604157 (-) True G134844
TU169245 lncRNA downstream 344193 11395960 ~ 11400701 (-) True G134819
TU169223 lncRNA downstream 397084 11330466 ~ 11347810 (-) False G134803
TU169027 lncRNA downstream 762103 10967276 ~ 10982791 (-) True G134648
TU169351 lncRNA upstream 246398 12014352 ~ 12017558 (-) True G134899
TU169392 lncRNA upstream 350386 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 498649 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 594581 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 798719 12566673 ~ 12589807 (-) True G135148
AMCG00012149 mRNA downstream 87762 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012141 mRNA downstream 204804 11536026 ~ 11540090 (-) True AMCG00012141
AMCG00012139 mRNA downstream 356160 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012132 mRNA downstream 393957 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012129 mRNA downstream 413613 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012154 mRNA upstream 8487 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012157 mRNA upstream 40045 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012156 mRNA upstream 75114 11843068 ~ 11866778 (-) True AMCG00012156
AMCG00012158 mRNA upstream 103283 11871237 ~ 11885827 (-) True AMCG00012158
AMCG00012160 mRNA upstream 122397 11890351 ~ 11896617 (-) True AMCG00012160
TU169224 other downstream 357915 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 783023 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 933013 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1488856 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1493779 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 306050 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 351326 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 423601 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 434808 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 453251 12221205 ~ 12223185 (-) True G134981

Expression Profile