RNA id: TU169351


Basic Information

Item Value
RNA id TU169351
length 1207
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G134899
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12014352 ~ 12017558 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGATCACAAGACTCAATGTATTTCACTGATATTGCAGTGAAAGTACAAAACAGTTTATTCTTTGATAGACCCACGCAAATACACGCACACATTTGGGAACCCAACAAAGGACCAATCCACTCCCTGCATTGGGAAGGTCACCCCTGGCTCACGgaaagaaaaagcaaaactcAAAAGACTACATAAAAGCCGGACATCGGGTTCTGAGAAGGAAAGATGAAAGGTTGGATCTGCACCTTCCTGCTCCTGCTGAGCCTGACCCTGGGAGAGACCCTCAAATGCAACCGCTGCATTGCTACGGGATCGGGCAGCTGCAGTAACACAGTGCAGACCTGCGGTTACAATGAAGATGCCTGCATTAGAGCAATATGGACAATTTCTCCCTATGGCCATTTCCGCCGCTGCATCAAGAAATCGGACTGCCTCATGTTGCAGGGCCTGAATGGTCTGACCGCTTACTGCTGCTACTCTGATCGCTGCAACTgagtggcagtgtgtgtgtgtgttttgtagttttgtctCAACTCTGCctcacagcaacaacaacaatgtcagCAGATTACTGGGATCAGCCCCACATCAGGCACagtgtaggatacaatagttcccAGCATACACAGCTTCCCAGGTTGACTTCCAGTGCCATTTCAATagcatgtaaaaaaaatcaaaactgcGCTGCTATACAATGTTGGCTGCACGGATCCAACTCCATTTGAACTCTGCCTGCTGAACGAAGGCGTGTTTGACTTATTCCCAATGTGCTCTCATGGATCCTTGTTCTCCTCTCTCGGGCTGGTGCTTGTTGGTGACATCACAGTCACGCTTGCGTCATCCTACGGGACAGCGCTGTCAAATGAGGTACATAACACTTCCTTTTAATCCTCAAAATTGATCAGGACATCAGACAGGGGAAGCTTAGGACACTGGGGCCTACTATAACTTGGCCAGACTTCAACTGATACAGGCCCAACCAGGGCGAACGCCTTACAGGTTAGATTCCACGTTTCACTCGCATTTCTTTTCTGCTCCTATATGGTTGTGTGCCTTTATATGGAGTCGATTTTCTAGCCCAGGCTGTGAGGGAGTCATATTAGTCAATACAGAGACTTCCTGTGGGGCTGCCTGTAGGGACTGCGATATTGAGGTCTGCcccctgtgtttttgtttgatgtaataaaatatttgtggaCAGTTAATTCCAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169274 lncRNA downstream 219014 11560097 ~ 11795338 (-) True G134840
TU169240 lncRNA downstream 244843 11496675 ~ 11769509 (-) True G134817
TU169296 lncRNA downstream 246398 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 247936 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 354047 11659721 ~ 11660305 (-) True G134849
TU169392 lncRNA upstream 100782 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 249045 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 344977 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 549115 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 550693 12568251 ~ 12716110 (-) False G135146
AMCG00012164 mRNA downstream 49534 11924321 ~ 11964818 (-) True AMCG00012164
AMCG00012160 mRNA downstream 117735 11890351 ~ 11896617 (-) True AMCG00012160
AMCG00012158 mRNA downstream 128525 11871237 ~ 11885827 (-) True AMCG00012158
AMCG00012156 mRNA downstream 147574 11843068 ~ 11866778 (-) True AMCG00012156
AMCG00012157 mRNA downstream 200741 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012163 mRNA upstream 12510 12030068 ~ 12032137 (-) True AMCG00012163
AMCG00012165 mRNA upstream 20667 12038225 ~ 12042088 (-) True AMCG00012165
AMCG00012166 mRNA upstream 25074 12042632 ~ 12051211 (-) True AMCG00012166
AMCG00012171 mRNA upstream 83686 12101244 ~ 12107414 (-) False AMCG00012171
AMCG00012170 mRNA upstream 91982 12109540 ~ 12122725 (-) True AMCG00012170
TU169224 other downstream 627373 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 1052481 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1202471 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1758314 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1763237 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 56446 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 101722 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 173997 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 185204 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 203647 12221205 ~ 12223185 (-) True G134981

Expression Profile