RNA id: TU169402



Basic Information


Item Value
RNA id TU169402
length 212
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G134944
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12159218 ~ 12159429 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGCTCCAGGATCGAGGTGTGCTTATGGTTCATTGGCTCTTCCTCCTCGGGCCGGGGGGGCGGTGGCGGTGGCGGCGGCTGGCTCAACAGCTCAGCCTCCTTCCTCTCCCCCTCGGACAGGTCGAACAGCTCCCTGATCGTTTGCTgttgggggagagagaggtagtGCTCAATATAGAAGCCACAGTGAAAGGGTTAAGCGTACTATCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169399 lncRNA upstream 760 12148067 ~ 12158458 (+) True G134942
TU169378 lncRNA upstream 39558 12119231 ~ 12119660 (+) True G134923
TU169327 lncRNA upstream 233087 11924268 ~ 11926131 (+) True G134879
TU169324 lncRNA upstream 240953 11916354 ~ 11918265 (+) True G134877
TU169323 lncRNA upstream 241481 11916344 ~ 11917737 (+) False G134877
TU169403 lncRNA downstream 1166 12160595 ~ 12161253 (+) True G134945
TU169404 lncRNA downstream 2029 12161458 ~ 12162298 (+) True G134946
TU169405 lncRNA downstream 3827 12163256 ~ 12163563 (+) True G134947
TU169406 lncRNA downstream 4226 12163655 ~ 12164196 (+) True G134948
TU169468 lncRNA downstream 200568 12359997 ~ 12360317 (+) True G135005
AMCG00012168 mRNA upstream 17743 12132247 ~ 12141475 (+) True AMCG00012168
AMCG00012167 mRNA upstream 63279 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012161 mRNA upstream 122696 12033347 ~ 12036522 (+) True AMCG00012161
AMCG00012162 mRNA upstream 130309 11991515 ~ 12028909 (+) True AMCG00012162
AMCG00012159 mRNA upstream 245264 11901547 ~ 11913954 (+) True AMCG00012159
AMCG00012172 mRNA downstream 58277 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012177 mRNA downstream 66885 12226314 ~ 12238811 (+) True AMCG00012177
AMCG00012178 mRNA downstream 86386 12245815 ~ 12247965 (+) True AMCG00012178
AMCG00012181 mRNA downstream 239175 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012182 mRNA downstream 290282 12449711 ~ 12453677 (+) True AMCG00012182
TU169350 other upstream 127728 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 713055 11436379 ~ 11446163 (+) True G134743
TU169087 other upstream 865319 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 868696 11242229 ~ 11290522 (+) False G134697
TU169413 other downstream 13109 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 21632 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 32126 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 406783 12566212 ~ 12716115 (+) False G135026
TU169507 other downstream 428595 12588024 ~ 12716115 (+) True G135026

Expression Profile