RNA id: TU169405


Basic Information

Item Value
RNA id TU169405
length 308
lncRNA type inter_gene
GC content 0.76
exon number 1
gene id G134947
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12163256 ~ 12163563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCGCTGGGCCCTGCAGCACCCTCAGCACCGGCCGCGGGGGGGGCGCAGGGGCGGAGGGCGGGGGGGACGGGGATCGCAGCGGGGGCCGTGGGGGGTGTGCCGGGCCGGGGAAGGGCACAGGGGAACGCAGGGTGAGCTGCGCAGGGGGGGGCAGGCGCAGGGAGGGGCTGTTGTTGGTCTGGGGAGAGGGCAACGGAGTGCGGGGCGAGGGCGGCACTGCCAGAGTGGGCACCCCCTCCTTGCCCGCCGCCTGACGCACCACGATCTTCACGATGCCGGAGCCCGACACCATGGAGGAGGGGACt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169404 lncRNA upstream 958 12161458 ~ 12162298 (+) True G134946
TU169403 lncRNA upstream 2003 12160595 ~ 12161253 (+) True G134945
TU169402 lncRNA upstream 3827 12159218 ~ 12159429 (+) True G134944
TU169399 lncRNA upstream 4798 12148067 ~ 12158458 (+) True G134942
TU169378 lncRNA upstream 43596 12119231 ~ 12119660 (+) True G134923
TU169406 lncRNA downstream 92 12163655 ~ 12164196 (+) True G134948
TU169468 lncRNA downstream 196434 12359997 ~ 12360317 (+) True G135005
TU169470 lncRNA downstream 198982 12362545 ~ 12362843 (+) True G135007
TU169511 lncRNA downstream 402649 12566212 ~ 12632060 (+) False G135026
TU169499 lncRNA downstream 404675 12568238 ~ 12716115 (+) False G135026
AMCG00012168 mRNA upstream 21781 12132247 ~ 12141475 (+) True AMCG00012168
AMCG00012167 mRNA upstream 67317 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012161 mRNA upstream 126734 12033347 ~ 12036522 (+) True AMCG00012161
AMCG00012162 mRNA upstream 134347 11991515 ~ 12028909 (+) True AMCG00012162
AMCG00012159 mRNA upstream 249302 11901547 ~ 11913954 (+) True AMCG00012159
AMCG00012172 mRNA downstream 54143 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012177 mRNA downstream 62751 12226314 ~ 12238811 (+) True AMCG00012177
AMCG00012178 mRNA downstream 82252 12245815 ~ 12247965 (+) True AMCG00012178
AMCG00012181 mRNA downstream 235041 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012182 mRNA downstream 286148 12449711 ~ 12453677 (+) True AMCG00012182
TU169350 other upstream 131766 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 717093 11436379 ~ 11446163 (+) True G134743
TU169087 other upstream 869357 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 872734 11242229 ~ 11290522 (+) False G134697
TU169413 other downstream 8975 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 17498 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 27992 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 402649 12566212 ~ 12716115 (+) False G135026
TU169507 other downstream 424461 12588024 ~ 12716115 (+) True G135026