RNA id: TU169416


Basic Information

Item Value
RNA id TU169416
length 260
RNA type TUCP
GC content 0.63
exon number 1
gene id G134958
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12181061 ~ 12181320 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGCCATCTTCTCTCCCCTCCTACCTGAATTTTGGAGCCGCTTTCTTTCACTAAAAACTCGGGGAAGGAGTCGCCATCCGCCTGAAATCGTCCTCAATCCGTAACGGGGCCGCTCCAAACTGTCTCTCGGTACCCAGCAGGCTGCTGGCGGGACCGTGGGAGCCGGTGAAAGTGCGGGCTGACTGGCTGCGGGTCCGGACGGCGATTCGGCGGCGGCTGCGGGGAGGAGACTCGGGTTTCACCGAAATGGAGGAGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169406 lncRNA upstream 16865 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 17498 12163256 ~ 12163563 (+) True G134947
TU169404 lncRNA upstream 18763 12161458 ~ 12162298 (+) True G134946
TU169403 lncRNA upstream 19808 12160595 ~ 12161253 (+) True G134945
TU169402 lncRNA upstream 21632 12159218 ~ 12159429 (+) True G134944
TU169468 lncRNA downstream 178677 12359997 ~ 12360317 (+) True G135005
TU169470 lncRNA downstream 181225 12362545 ~ 12362843 (+) True G135007
TU169511 lncRNA downstream 384892 12566212 ~ 12632060 (+) False G135026
TU169499 lncRNA downstream 386918 12568238 ~ 12716115 (+) False G135026
TU169512 lncRNA downstream 386918 12568238 ~ 12591356 (+) False G135026
AMCG00012168 mRNA upstream 39586 12132247 ~ 12141475 (+) True AMCG00012168
AMCG00012167 mRNA upstream 85122 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012161 mRNA upstream 144539 12033347 ~ 12036522 (+) True AMCG00012161
AMCG00012162 mRNA upstream 152152 11991515 ~ 12028909 (+) True AMCG00012162
AMCG00012159 mRNA upstream 267107 11901547 ~ 11913954 (+) True AMCG00012159
AMCG00012172 mRNA downstream 36386 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012177 mRNA downstream 44994 12226314 ~ 12238811 (+) True AMCG00012177
AMCG00012178 mRNA downstream 64495 12245815 ~ 12247965 (+) True AMCG00012178
AMCG00012181 mRNA downstream 217284 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012182 mRNA downstream 268391 12449711 ~ 12453677 (+) True AMCG00012182
TU169413 other upstream 8259 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 149571 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 734898 11436379 ~ 11446163 (+) True G134743
TU169087 other upstream 887162 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 890539 11242229 ~ 11290522 (+) False G134697
TU169428 other downstream 10235 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 384892 12566212 ~ 12716115 (+) False G135026
TU169507 other downstream 406704 12588024 ~ 12716115 (+) True G135026
TU169513 other downstream 406704 12588024 ~ 12716115 (+) False G135026
TU169491 other downstream 432653 12613973 ~ 12646572 (+) True G135025

Expression Profile