RNA id: TU169470


Basic Information

Item Value
RNA id TU169470
length 299
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G135007
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12362545 ~ 12362843 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGTCCACAGCAgagctctgtgtgtctcagcaGCAgagtgtccctgtgtctctctcttcatcAGGAGACAGACCTACCTGCTGCACTGCACAGCCACTGCCATTCTgcaacagagacacagacaggattAACTCCAGTCACACACCGCGCTCCACACtggagatacagagacacagacaggattAACTCCAGTCACACACTGCGCTCCACACtggagatacagagacacagacaggattAACTCCAGTCACACACCGCGCTCCACACtggagatacagagacacagacaggattATCT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169468 lncRNA upstream 2228 12359997 ~ 12360317 (+) True G135005
TU169406 lncRNA upstream 198349 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 198982 12163256 ~ 12163563 (+) True G134947
TU169404 lncRNA upstream 200247 12161458 ~ 12162298 (+) True G134946
TU169403 lncRNA upstream 201292 12160595 ~ 12161253 (+) True G134945
TU169511 lncRNA downstream 203369 12566212 ~ 12632060 (+) False G135026
TU169499 lncRNA downstream 205395 12568238 ~ 12716115 (+) False G135026
TU169512 lncRNA downstream 205395 12568238 ~ 12591356 (+) False G135026
TU169497 lncRNA downstream 225181 12588024 ~ 12631810 (+) False G135026
TU169514 lncRNA downstream 225181 12588024 ~ 12631810 (+) False G135026
AMCG00012178 mRNA upstream 114580 12245815 ~ 12247965 (+) True AMCG00012178
AMCG00012177 mRNA upstream 123734 12226314 ~ 12238811 (+) True AMCG00012177
AMCG00012172 mRNA upstream 139540 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012168 mRNA upstream 221070 12132247 ~ 12141475 (+) True AMCG00012168
AMCG00012167 mRNA upstream 266606 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012181 mRNA downstream 35761 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012182 mRNA downstream 86868 12449711 ~ 12453677 (+) True AMCG00012182
AMCG00012187 mRNA downstream 154525 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012189 mRNA downstream 178992 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012190 mRNA downstream 203798 12566641 ~ 12569000 (+) True AMCG00012190
TU169428 other upstream 170137 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 181225 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 189743 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 331055 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 916382 11436379 ~ 11446163 (+) True G134743
TU169500 other downstream 203369 12566212 ~ 12716115 (+) False G135026
TU169507 other downstream 225181 12588024 ~ 12716115 (+) True G135026
TU169513 other downstream 225181 12588024 ~ 12716115 (+) False G135026
TU169491 other downstream 251130 12613973 ~ 12646572 (+) True G135025
TU169498 other downstream 278001 12640844 ~ 12716115 (+) False G135026

Expression Profile