RNA id: TU169491



Basic Information


Item Value
RNA id TU169491
length 950
RNA type TUCP
GC content 0.43
exon number 2
gene id G135025
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12613973 ~ 12648812 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GaggtttttaagtttattaaaaaaacaaatcgtTTTCCAATACCAATAGAAACCTCTCAATGTGGGCGATAACGTTTGAAAAATCTcccattttcagattttatttcgttttttcaGTGCAAAATCAAGCAAATCAAACTTTTATTTCACAGGTATAAAAGTATTTACAGCTATTTACATGATATtcatagtaacaataataaagttatTAACATGTAGATTTCCTAAATGAATGAAGGTGTTTCACTCGGTCAGAAACCCGTGAGGCTGCAGAGCCGaaataataactgaattaaTAGAGACACTTAttttacaacatatatatagaagcacaggagccacagagcgacatcatcataataataacgaTTTTCTCATGAATGTCCCGTTTCAGTCTCAACAGGAGGCAGAATCACAAGGTCTCTGTTTCTATCCCAGTTCCAAAAGACTGGATAGATCTTCTCTCCCTCAGTGAAGTGCATGTCAGTGAAGGTGTAGATATGAGCCCTGGACTCCACTGTGTAAAAGGAGACCCGTCTCTCCTCAATAtccacacacacccccagcaTCCTGGGACGCAGAGTCTGAGGGAGGCGGGTCCCAGGGTCAGTGAGAGCAGAGAGATAAGAAGACAAACATTGCAGACACCAGTATCCCTGCTGGGGAGTGAAGCTGAACACTCCTCTCCTGTTTGCAGACTCTCTGGTGACTCCTATTCTCCACCCTCCATTCACCTCCACCACCCAGTAGTGTCTCCCTGAGGTGAAGCTCTCTCTGCTCACGACACACTCCCAGGAATCAAATCTGTGCTGATTGTCAGGGAGATCCTGCCTCTCTGCATATCTCACTCTCTTCCCATCCTCAGACAGGGTCAGTTCACAGTTTGCTGTCTCAGGGTCCAGAATCACATCAGCTGTGGGCAAACAATAGAAAACACTGGGATCAGAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169512 lncRNA upstream 22617 12568238 ~ 12591356 (+) False G135026
TU169470 lncRNA upstream 251130 12362545 ~ 12362843 (+) True G135007
TU169468 lncRNA upstream 253656 12359997 ~ 12360317 (+) True G135005
TU169406 lncRNA upstream 449777 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 450410 12163256 ~ 12163563 (+) True G134947
TU169508 lncRNA downstream 6723 12653295 ~ 12716115 (+) False G135026
TU169517 lncRNA downstream 46096 12692668 ~ 12693815 (+) True G135028
TU169522 lncRNA downstream 55751 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA downstream 73290 12719862 ~ 12721164 (+) True G135033
TU169528 lncRNA downstream 137516 12784088 ~ 12786060 (+) True G135038
AMCG00012186 mRNA upstream 22601 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012190 mRNA upstream 44973 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 65329 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012187 mRNA upstream 85058 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012182 mRNA upstream 160296 12449711 ~ 12453677 (+) True AMCG00012182
AMCG00012192 mRNA downstream 4581 12651153 ~ 12654316 (+) True AMCG00012192
AMCG00012191 mRNA downstream 68424 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012193 mRNA downstream 111449 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 116052 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 140828 12787400 ~ 12788020 (+) True AMCG00012199
TU169428 other upstream 421565 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 432653 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 441171 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 582483 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 1167810 11436379 ~ 11446163 (+) True G134743
TU169493 other downstream 4067 12650639 ~ 12716115 (+) False G135026
TU169494 other downstream 62318 12708890 ~ 12716115 (+) False G135026
TU169504 other downstream 68424 12714996 ~ 12716115 (+) False G135026
TU169527 other downstream 124211 12770783 ~ 12777157 (+) True G135037
TU169530 other downstream 138636 12785208 ~ 12786060 (+) False G135038

Expression Profile