RNA id: TU169493



Basic Information


Item Value
RNA id TU169493
length 1016
RNA type TUCP
GC content 0.50
exon number 5
gene id G135026
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12566212 ~ 12716115 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGAGGCTTAAACAGAGTCATTGTCTTCTATTAGTGACAGTTTTCTCAGCAGAGCAATCCTGTTGTCTGGATTCAGCGACACCAATATAGCACTTAATCGTGCAAGTCTGTTCCACAAGAACTGGGCTGAGGACTGGAGCCGCTAGGATCTTCTTAAACCAGTTCTTCTTCACCTGAGTACAGGGCTCTCTGAGAAACTGCTCTCCAGCTGGGATTGGcctgtgagtctgtctgtctgtccctgggATGAAGTCTGACCAATCAGAGTGGCTCTGTGTGATTGTCCTGCTGCTCCAGCAGACCTCAGTGTCAGGATCAGAGAGGTTTGAGGTTCTTGGTCCAGCTGATCCCATTTCTGTTTACCCTGGAGAAGACGCTGTTCTGCCCTGTTACCTCTCACCCAACATCAGCGCTGAGGACATGCAGATCATGTGGTTCAGAGAGGACCCCTCAGCCCCTGTCTGTTTATACCGGTATGGCCGGTATAACTTTAACAGGCAGATCCCATCCTACAAGGGCAGGGCTGAGCTTTTCCCAGAGGAGTTCAGGAAAGGCAACGTGTCTCTGAGACTGAAGGATGTGCGCGGCTCTGATGATGGACAGTACAACTGTATGGTCCAGTATGCAGGCTCGTATGAAGAGGCTCTTATTGATGTGGTTGTCAGAGGTCAGTCCTCAGTGTCCCTCCACTCTGAAGGAGGTCAGACCCGGCTGGAGTGCAGGTCAGATCGGTACCCTGAGCCTGCAGTGATCTGGACAGACAGGGACGGACACGACGTCACATCACTGTCCAACACcacagagcagagagacagtgaggggCGTCTCAGTCTGAGGAGCTTCATCCCAGTCAGACAGGAGTCCAATGTCTTCAGCTGCCTGATTAGAAGTGCAGGATCTGAACCAAACTGGGAACCACAACTCCACATACCCAGTATGTATAAAAAACTTGAAATTGTTTTTATGGTTGAGGTTATTGTAGTCAACACAGAACATAATGACATGTTACCTAANNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169488 lncRNA upstream 1827 12613973 ~ 12648812 (+) False G135025
TU169519 lncRNA upstream 2026 12612165 ~ 12648613 (+) True G135030
TU169489 lncRNA upstream 4559 12613973 ~ 12646080 (+) False G135025
TU169511 lncRNA upstream 18579 12566212 ~ 12632060 (+) False G135026
TU169497 lncRNA upstream 18829 12588024 ~ 12631810 (+) False G135026
TU169523 lncRNA downstream 3747 12719862 ~ 12721164 (+) True G135033
TU169528 lncRNA downstream 67973 12784088 ~ 12786060 (+) True G135038
TU169539 lncRNA downstream 120137 12836252 ~ 12840315 (+) True G135045
TU169548 lncRNA downstream 157103 12873218 ~ 12895581 (+) True G135051
TU169550 lncRNA downstream 173655 12889770 ~ 12901593 (+) True G135053
AMCG00012198 mRNA upstream 27558 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012186 mRNA upstream 59267 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012190 mRNA upstream 81639 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 101995 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012187 mRNA upstream 121724 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012193 mRNA downstream 41906 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 46509 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 71285 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012200 mRNA downstream 74412 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012206 mRNA downstream 316993 13033108 ~ 13065375 (+) True AMCG00012206
TU169491 other upstream 4067 12613973 ~ 12646572 (+) True G135025
TU169428 other upstream 458231 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 469319 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 477837 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 619149 12030897 ~ 12031490 (+) True G134898
TU169527 other downstream 54668 12770783 ~ 12777157 (+) True G135037
TU169530 other downstream 69093 12785208 ~ 12786060 (+) False G135038
TU169576 other downstream 252262 12968377 ~ 12974053 (+) True G135070
TU169632 other downstream 553081 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 706320 13422435 ~ 13425359 (+) True G135058

Expression Profile