RNA id: TU169515


Basic Information

Item Value
RNA id TU169515
length 264
lncRNA type sense_over
GC content 0.56
exon number 2
gene id G135027
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12636699 ~ 12699876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTGGAGTTGTGGTTCCCAGTCTGCTTCAGGTTCTGCACTTCTAATCAGGCAGCTGAAGACATTGGACTCCTGTCTGACTGGGATGGAGCTCCTCAGACTGAGACGcccctcactgtctctctgcaCTGTGGTGTTGGACAGTGATGTGACGTCGTGTCCGTCCCTGTCTGTCCAGATCACTGCAGGCTCAGGGTACCAGCCCTCTGACCTGAACTCCAGCCGGGTCTGACCTTCTTCAGAGTGGAGGGACACTGAAGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169511 lncRNA upstream 4639 12566212 ~ 12632060 (+) False G135026
TU169497 lncRNA upstream 4889 12588024 ~ 12631810 (+) False G135026
TU169514 lncRNA upstream 4889 12588024 ~ 12631810 (+) False G135026
TU169512 lncRNA upstream 45343 12568238 ~ 12591356 (+) False G135026
TU169470 lncRNA upstream 273856 12362545 ~ 12362843 (+) True G135007
TU169522 lncRNA downstream 2447 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA downstream 19986 12719862 ~ 12721164 (+) True G135033
TU169528 lncRNA downstream 84212 12784088 ~ 12786060 (+) True G135038
TU169539 lncRNA downstream 136376 12836252 ~ 12840315 (+) True G135045
TU169548 lncRNA downstream 173342 12873218 ~ 12895581 (+) True G135051
AMCG00012198 mRNA upstream 13618 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012186 mRNA upstream 45327 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012190 mRNA upstream 67699 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 88055 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012187 mRNA upstream 107784 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012191 mRNA downstream 15120 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012193 mRNA downstream 58145 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 62748 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 87524 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012200 mRNA downstream 90651 12790527 ~ 12799451 (+) True AMCG00012200
TU169428 other upstream 444291 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 455379 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 463897 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 605209 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 1190536 11436379 ~ 11446163 (+) True G134743
TU169494 other downstream 9014 12708890 ~ 12716115 (+) False G135026
TU169504 other downstream 15120 12714996 ~ 12716115 (+) False G135026
TU169527 other downstream 70907 12770783 ~ 12777157 (+) True G135037
TU169530 other downstream 85332 12785208 ~ 12786060 (+) False G135038
TU169576 other downstream 268501 12968377 ~ 12974053 (+) True G135070

Expression Profile