RNA id: TU169523



Basic Information


Item Value
RNA id TU169523
length 250
lncRNA type intronic
GC content 0.36
exon number 2
gene id G135033
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12719862 ~ 12721164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GcatgccattaaaaacaatgcaacttTATTGGTATACAATTGCAATAGACCAGGCATTGTATAGAAACAGGTAGTATAAAATCTGCCACCACTTTTGGTCAACCAGGAAGGACTGGTAgggaaatacattaaactaaCTGAATGCACTACAAACCACTGATCATTTTAACACTGTTACCATagaataaataagttataattcTTTATTGGGATTTCACACAAAGGTGACAATGAGGAGGGGGAAATGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169499 lncRNA upstream 3747 12568238 ~ 12716115 (+) False G135026
TU169508 lncRNA upstream 3747 12653295 ~ 12716115 (+) False G135026
TU169515 lncRNA upstream 19986 12636699 ~ 12699876 (+) True G135027
TU169517 lncRNA upstream 26047 12692668 ~ 12693815 (+) True G135028
TU169488 lncRNA upstream 71050 12613973 ~ 12648812 (+) False G135025
TU169528 lncRNA downstream 62924 12784088 ~ 12786060 (+) True G135038
TU169539 lncRNA downstream 115088 12836252 ~ 12840315 (+) True G135045
TU169548 lncRNA downstream 152054 12873218 ~ 12895581 (+) True G135051
TU169550 lncRNA downstream 168606 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA downstream 175866 12897030 ~ 12897756 (+) True G135055
AMCG00012192 mRNA upstream 65546 12651153 ~ 12654316 (+) True AMCG00012192
AMCG00012198 mRNA upstream 96781 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012186 mRNA upstream 128490 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012190 mRNA upstream 150862 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 171218 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012193 mRNA downstream 36857 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 41460 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 66236 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012200 mRNA downstream 69363 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012206 mRNA downstream 311944 13033108 ~ 13065375 (+) True AMCG00012206
TU169500 other upstream 3747 12566212 ~ 12716115 (+) False G135026
TU169507 other upstream 3747 12588024 ~ 12716115 (+) True G135026
TU169513 other upstream 3747 12588024 ~ 12716115 (+) False G135026
TU169498 other upstream 3747 12640844 ~ 12716115 (+) False G135026
TU169493 other upstream 3747 12650639 ~ 12716115 (+) False G135026
TU169527 other downstream 49619 12770783 ~ 12777157 (+) True G135037
TU169530 other downstream 64044 12785208 ~ 12786060 (+) False G135038
TU169576 other downstream 247213 12968377 ~ 12974053 (+) True G135070
TU169632 other downstream 548032 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 701271 13422435 ~ 13425359 (+) True G135058

Expression Profile