RNA id: TU169539


Basic Information

Item Value
RNA id TU169539
length 1965
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G135045
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12836252 ~ 12840315 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaactaaattaNgcttacaaaataaacactgaccACCTTGCAATTCATACATCTTAATTTATTCCATGATTAGATGGTGTCATTCAGCacaataacaataggttgcgtatgcaaccatggttatctgagaaaataaacactgcctaagggggaggggttacagaaTTACCAAACCATCGCatgggaggaggcagtgagctggtaAGATGGCCTGCCCTGAggcgtacctactaggagccataccaactctatgatagaagccACAGGTGCCCCTTGTGGCCAAATCCGGGCTACCCAAATGCGAAGACTGCAGTCACACTGAACTGAGAAGAAATAACAAATGGTGTTTCCACGTGGCAACAAGAAAACTTGTGCCTACCGCaaagcctagtaatagcggcctACTACTCTACTAGCAGGGCTGGGAGCGGGGCCAATACCAAGTCCACACCATAAAAGCACAGGGTGCAGTCTCACACCCTGTGCTCAACATACAGCGGGCTAACCAGACTGGATAGCCACTGCGggatagttcaattaaataatggaactatatacacagcggggcaacaagagccaactcaagtgccttccACTGGACACCGCAGCAGTGGCCCCCTGCACATCTAGCATAGCtagagcagggccacagactgCTGCAAAGGAACTATATAGATAGCGAGGCACAACGTGCCCTCATAAACAACAGGAGCAGTCGTCCACGCTCAACTTAataaggagcggacaagctcaactgtctataccaggggtagtcaataggcggcCCATGGGTCAAATCCGGCACACCAGACACTTTTGACTGGACTGCaagaataattttatatatttattttaagtaatgttaCGGAGACTGCAGACGACGCACTAGCCGATATAGTATGACGGGCACAAgggtcaatggcagctttgatagacaaatgtcttcgatacgttCCAGCGCACGTGCTGAAaatccctcccccttgggcagtgcttctaactcgaaagatagcCAATGTTAACAAagtaacacacacagcaatttagCATTAACAATTAACttaagcagcatgtctttgggatgtgggaagAAACCAGATACCCGACAGCAAACCCACAAGGCAACAAGGAGAACAGGCCctctccacacaggcagacacctgTGGAcagttgcataaacatagactaagtctttgtctaagtataattataagtcatactAACGATAGACACTCGGTTAAAACCGGGATCCCATCTTttcatcacacacttttcatcacaaacatttaaccACCCCACACAGGTCCCCTTGGTTAAAGGAAGAATATTGACGTACAATTCAAAAAGATGCAccaaagagcagtttattcacacaacagaatataattaataagtTTAAAACCGACAGTTTAAAAGCCCCTTTTAGTGTGGCATTTGCAATTCAGAAGTAAACatctctgcatatgtgaatttctcccacatATCCAATCTTatgtgttactaaatattttaattaaatacatcagtgGCGAACTGTCAGGGCCTTCAAAGTATTCAGAGAAGGCCCTGGAATcctcagatgaaaaaaaaaaaaaccgtaatgaattctataaataaaataaaataaaattccgcaaacttgtttcttgttttctgtccatGCACTgtgcatttgaatgtttttttgttgggaaaaaatacaacaaatcaGATATTTTTCTACGGACTCTCTGGGGAGAATATCGTTCATCCAGGgtattttatttcctcaatAGAATGCCCGGCCCATTAAACTGAATGAGAGGGCATGTTTGGATTGACAACTTGATCAACCAATCATATTTGGATTTGTAGCCAATGGGCGTATTATTTCAGATTTCCCACAGCTCCAGGGTATTCTAGAAGACCTGCTTACGTTAAGACACCTAGCTTAGTGCTGCTAACTAGCGATTGATAGCGGACANN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169528 lncRNA upstream 50192 12784088 ~ 12786060 (+) True G135038
TU169522 lncRNA upstream 112058 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA upstream 115088 12719862 ~ 12721164 (+) True G135033
TU169508 lncRNA upstream 120137 12653295 ~ 12716115 (+) False G135026
TU169515 lncRNA upstream 136376 12636699 ~ 12699876 (+) True G135027
TU169548 lncRNA downstream 32903 12873218 ~ 12895581 (+) True G135051
TU169550 lncRNA downstream 49455 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA downstream 56715 12897030 ~ 12897756 (+) True G135055
TU169568 lncRNA downstream 119433 12959748 ~ 13247725 (+) False G135067
TU169569 lncRNA downstream 119433 12959748 ~ 13247725 (+) False G135067
AMCG00012200 mRNA upstream 36801 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012199 mRNA upstream 48232 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012194 mRNA upstream 72576 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012193 mRNA upstream 77506 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012191 mRNA upstream 114628 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012206 mRNA downstream 192793 13033108 ~ 13065375 (+) True AMCG00012206
AMCG00012207 mRNA downstream 228889 13069204 ~ 13074014 (+) True AMCG00012207
AMCG00012209 mRNA downstream 239874 13080189 ~ 13080518 (+) True AMCG00012209
AMCG00012210 mRNA downstream 279698 13120013 ~ 13122006 (+) True AMCG00012210
AMCG00012211 mRNA downstream 286853 13127168 ~ 13131962 (+) True AMCG00012211
TU169530 other upstream 50192 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 59095 12770783 ~ 12777157 (+) True G135037
TU169498 other upstream 120137 12640844 ~ 12716115 (+) False G135026
TU169576 other downstream 128062 12968377 ~ 12974053 (+) True G135070
TU169632 other downstream 428881 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 582120 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 630786 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 630786 13471101 ~ 13508799 (+) False AMCG00012228

Expression Profile