RNA id: TU169552


Basic Information

Item Value
RNA id TU169552
length 527
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G135055
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12897030 ~ 12897756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAAGGAGTATTAACCCAACTCCAACCACTGAATCTATTGAGAGCCTCGGAATATAGGTATAGAGGACACATACACATGAATAGTGTAGTAAGAACATTTACTTAAACTCCAATAGAGAATATTACAATAGAGATACTACAGACCAGGTATTCCAAAACAGTTAAAAAGTTCTNNNNNNNNNNGTCAAacttatgtgtgagtgtgtgagagagtaagCGTGTGATTGAGTGAGCGTGTgggggtgtgtgagagagtaagCGTGTGATTGAGTGagcgtgtgggtgtgtgtgagagagtaagcgtgtgattgagtgagtgtgggtgtgtgtgagagagtaagCATGTGATTGAatgagtgtgggtgtgtgtgagagagggagtgtattGAATGAGTGNNNNNNNNNNGTGGCCTACATTGCAGAGGTTTCTTTAGCTACTGATGCCGTTAAGCACAACTAACTTTTCATAATGTGTGGCATTTAGACGTTGTCGATAGGGCTGGTTGATCAGTCCAGCAAAGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169548 lncRNA upstream 1449 12873218 ~ 12895581 (+) True G135051
TU169539 lncRNA upstream 56715 12836252 ~ 12840315 (+) True G135045
TU169528 lncRNA upstream 110970 12784088 ~ 12786060 (+) True G135038
TU169522 lncRNA upstream 172836 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA upstream 175866 12719862 ~ 12721164 (+) True G135033
TU169568 lncRNA downstream 61992 12959748 ~ 13247725 (+) False G135067
TU169569 lncRNA downstream 61992 12959748 ~ 13247725 (+) False G135067
TU169570 lncRNA downstream 61992 12959748 ~ 13247725 (+) True G135067
TU169578 lncRNA downstream 86689 12984445 ~ 12985094 (+) True G135072
TU169579 lncRNA downstream 87751 12985507 ~ 12986142 (+) True G135073
AMCG00012200 mRNA upstream 97579 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012199 mRNA upstream 109010 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012194 mRNA upstream 133354 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012193 mRNA upstream 138284 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012191 mRNA upstream 175406 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012206 mRNA downstream 135352 13033108 ~ 13065375 (+) True AMCG00012206
AMCG00012207 mRNA downstream 171448 13069204 ~ 13074014 (+) True AMCG00012207
AMCG00012209 mRNA downstream 182433 13080189 ~ 13080518 (+) True AMCG00012209
AMCG00012210 mRNA downstream 222257 13120013 ~ 13122006 (+) True AMCG00012210
AMCG00012211 mRNA downstream 229412 13127168 ~ 13131962 (+) True AMCG00012211
TU169530 other upstream 110970 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 119873 12770783 ~ 12777157 (+) True G135037
TU169493 other upstream 180915 12650639 ~ 12716115 (+) False G135026
TU169576 other downstream 70621 12968377 ~ 12974053 (+) True G135070
TU169632 other downstream 371440 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 524679 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 573345 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 573345 13471101 ~ 13508799 (+) False AMCG00012228

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_01896359_01898516.mRNA True 1327 mRNA 0.40 4 CI01000320 1895824 ~ 1898516 (-)