RNA id: TU169569


Basic Information

Item Value
RNA id TU169569
length 318
lncRNA type read_through
GC content 0.50
exon number 2
gene id G135067
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12959748 ~ 13247725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGAGCTCAGTTCACTATGGAGAATAAAAGTGTCCTCACTGTACCTGATCCTGACACTGAGGTCTGCTGGAGCAGCAGGACAATCACACAGAGCCACTCTGATCGGTCAGACTTCATCcctgggacagacagacagacagactcgcAGGCCAATCCCAGCTGGAGAGCAGTGTCTCAGAGCCCAGGTGAGGAAGAACTGAGGAACAGCAAAGTGTAACATTAGAAACTGTGTGTACTGCACTGAATAACCACAATAAACAGCTATTATGATTGGGAGATACAGCCATTGCACTCGTGTCTCTGCACACATGCggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169550 lncRNA upstream 58155 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA upstream 61992 12897030 ~ 12897756 (+) True G135055
TU169548 lncRNA upstream 64167 12873218 ~ 12895581 (+) True G135051
TU169539 lncRNA upstream 119433 12836252 ~ 12840315 (+) True G135045
TU169528 lncRNA upstream 173688 12784088 ~ 12786060 (+) True G135038
TU169629 lncRNA downstream 14034 13261759 ~ 13262054 (+) True G135110
TU169641 lncRNA downstream 39941 13287666 ~ 13294886 (+) False G135117
TU169639 lncRNA downstream 45894 13293619 ~ 13298200 (+) True G135117
TU169667 lncRNA downstream 124878 13372603 ~ 13397636 (+) True G135131
TU169673 lncRNA downstream 169680 13417405 ~ 13421051 (+) True G135137
AMCG00012200 mRNA upstream 160297 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012199 mRNA upstream 171728 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012194 mRNA upstream 196072 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012193 mRNA upstream 201002 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012191 mRNA upstream 238124 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012217 mRNA downstream 21642 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012223 mRNA downstream 55331 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012224 mRNA downstream 70190 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012228 mRNA downstream 259289 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012227 mRNA downstream 277959 13525684 ~ 13527970 (+) True AMCG00012227
TU169530 other upstream 173688 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 182591 12770783 ~ 12777157 (+) True G135037
TU169493 other upstream 243633 12650639 ~ 12716115 (+) False G135026
TU169632 other downstream 21471 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 174710 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 223376 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 223376 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other downstream 258465 13506190 ~ 13508799 (+) True AMCG00012228

Expression Profile