RNA id: TU169614


Basic Information

Item Value
RNA id TU169614
length 1779
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G135097
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13212674 ~ 13216360 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacccggggacacaaatgcaaattgggcttcaaggcattcaagacataaaacaggagacacttcttcacagagagttgtcacaatctgaacaaactccccagcgatgtggttgaagctgaaagtttgggaacatttaaaaacagactggatgggatccttgcatcactcagttattaatggcctcctctcgttgAATAACAGAACCAGATGGCGACCGTTATCTTATGGAGCTGCTACGTCAAGTTTGCGTGTGAAATCATCCAGCAGCTCCATTCGACTCCACCACGACATAGTCCGCAAGGAAAAAGCAAAGCAGCATTGTGACGAGGCTGCGGAGGAGGAGCTGGAAGTGGTCCAGGGGCATGGAAGTCCGTGACTGGTATTCTGACACACCGATAAAGAGACTCTCAACTCGTCATCTCTTACCTGCATTTGTAGACCAAGATGGGAACAGGTGAGACTTCCAGGCAGTGTCTTTAAACCCAGTGCTGTCAGACCCCGGTCCTGCAGAGTCAATGCCCAGCTGGGTTCTGGAATTGTTTTCTCCAAGCCATTGttgagcacagcacagcacagcacagtaggGTACAGTAGAGTACAAAGGTCAGTCTGTACCATGGATCCGTCAGCTCATAAAACAACTGCCCTGGAAATAATTGGAATACTCCGAGGTACCATATGAGGTTTATTTGCAGACAAACTAAGGGTATCAACCTCCAATGTACAATACTTCATGTAAGTCAGATGTATAGTGATACACACAGAGAATGTACACACATGCAGACCTGTGAGAATGCtgccatcatcatcatcatcagtgtactgcagtggttctcaatcctggtcgtGGCGGAACACTGACCCTGACCCTGAAGTAATTTCCAAATTCAgagcaatttaattattttgaagagTAGAGgatttaagtataaaattgtataaggaaatcaTCTTATttaggaaccaactttttatcagatACACAGTTTAAAGATTCAGATGTAATcaaatgacttcaattaagggttcaattaagtaattgagagctcagttggaacaaaaaccagcagggtcagtgttctgccacgaccaggattgagaaccactggtgtaGTGCACAGATAGCTTTCATAGCAATAAAAAATGACCACTCAGGATGactcaatacaataataaactaaCACCAAATGGACaatgtatttctctgttttttagGACAAACTCTCCCACCCCCTCCTCATAATACATCCACAACATCAAGGTCAACTGAGCAGTAATTCACTAACATTGAACAGTCAAGTTACTTAATTTTAGGAAATTGTGTAATGTATTTGCTTAAGGtcaatgtttaatgtattatcatcatcatcatcataaggCAATTCAcacccctgtctctctctgtctggttTCTGTCTgcccgtctgtctgtccatccatcTGGTCTCTGCCTCTGCATACAATGGAATCAGGGCTAATATGGGGTGCAGTGCCTAGTTTCCCAACCCTAGTCCTGGAcaaccccctaccctgctgtttttttttttctttcaaccattaattgaagtaacaatctgcttagatttgactttttaaattgtgtactaTAAGAGTTGGTTCtgtaataagttctttatattATACTcctaccatttaaaataattaaacggCTCTGATTGAggaattattagttcaattaagtaattgagagcttggttggaacaaaaaccagaagggtAGGGAACCCTGTCAATAGAGTGATGTCACAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169579 lncRNA upstream 228190 12985507 ~ 12986142 (+) True G135073
TU169578 lncRNA upstream 229238 12984445 ~ 12985094 (+) True G135072
TU169550 lncRNA upstream 312739 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA upstream 316576 12897030 ~ 12897756 (+) True G135055
TU169548 lncRNA upstream 318751 12873218 ~ 12895581 (+) True G135051
TU169629 lncRNA downstream 45399 13261759 ~ 13262054 (+) True G135110
TU169641 lncRNA downstream 71306 13287666 ~ 13294886 (+) False G135117
TU169639 lncRNA downstream 77259 13293619 ~ 13298200 (+) True G135117
TU169667 lncRNA downstream 156243 13372603 ~ 13397636 (+) True G135131
TU169673 lncRNA downstream 201045 13417405 ~ 13421051 (+) True G135137
AMCG00012218 mRNA upstream 11940 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012212 mRNA upstream 31502 13166600 ~ 13182830 (+) True AMCG00012212
AMCG00012213 mRNA upstream 65758 13144427 ~ 13148574 (+) True AMCG00012213
AMCG00012211 mRNA upstream 82370 13127168 ~ 13131962 (+) True AMCG00012211
AMCG00012210 mRNA upstream 92326 13120013 ~ 13122006 (+) True AMCG00012210
AMCG00012217 mRNA downstream 53007 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012223 mRNA downstream 86696 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012224 mRNA downstream 101555 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012228 mRNA downstream 290654 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012227 mRNA downstream 309324 13525684 ~ 13527970 (+) True AMCG00012227
TU169576 other upstream 240279 12968377 ~ 12974053 (+) True G135070
TU169530 other upstream 428272 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 437175 12770783 ~ 12777157 (+) True G135037
TU169494 other upstream 498217 12708890 ~ 12716115 (+) False G135026
TU169632 other downstream 52836 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 206075 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 254741 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 254741 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other downstream 289830 13506190 ~ 13508799 (+) True AMCG00012228

Expression Profile