RNA id: TU169629


Basic Information

Item Value
RNA id TU169629
length 268
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G135110
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13261759 ~ 13262054 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctGTCCACCACCTCTCCTAGTCTCACCCCCAGCCTGACCGGCACACTGCTGCTAAACTCTGTAACACAACAGCACTGAgagatcagagagagagagagagagagagagatgggagaagAACACAGGATGCAGAGAAATGAGGCACAGAGTTCacacagagagtgtgtgtgagggggtagagagagggagaaggaaagagaggaaAATAGAGTATAGATGTTGCAAAAGACAGAGTGAGGGGGAGATAGCAAGACAAAATGACAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169568 lncRNA upstream 14034 12959748 ~ 13247725 (+) False G135067
TU169569 lncRNA upstream 14034 12959748 ~ 13247725 (+) False G135067
TU169570 lncRNA upstream 14034 12959748 ~ 13247725 (+) True G135067
TU169615 lncRNA upstream 45399 13212674 ~ 13216360 (+) False G135097
TU169614 lncRNA upstream 45399 13214332 ~ 13216360 (+) True G135097
TU169641 lncRNA downstream 25612 13287666 ~ 13294886 (+) False G135117
TU169639 lncRNA downstream 31565 13293619 ~ 13298200 (+) True G135117
TU169667 lncRNA downstream 110549 13372603 ~ 13397636 (+) True G135131
TU169673 lncRNA downstream 155351 13417405 ~ 13421051 (+) True G135137
TU169675 lncRNA downstream 165297 13427351 ~ 13427999 (+) True G135138
AMCG00012218 mRNA upstream 59367 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012212 mRNA upstream 78929 13166600 ~ 13182830 (+) True AMCG00012212
AMCG00012213 mRNA upstream 113185 13144427 ~ 13148574 (+) True AMCG00012213
AMCG00012211 mRNA upstream 129797 13127168 ~ 13131962 (+) True AMCG00012211
AMCG00012210 mRNA upstream 139753 13120013 ~ 13122006 (+) True AMCG00012210
AMCG00012217 mRNA downstream 7313 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012223 mRNA downstream 41002 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012224 mRNA downstream 55861 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012228 mRNA downstream 244960 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012227 mRNA downstream 263630 13525684 ~ 13527970 (+) True AMCG00012227
TU169576 other upstream 287706 12968377 ~ 12974053 (+) True G135070
TU169530 other upstream 475699 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 484602 12770783 ~ 12777157 (+) True G135037
TU169494 other upstream 545644 12708890 ~ 12716115 (+) False G135026
TU169632 other downstream 7142 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 160381 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 209047 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 209047 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other downstream 244136 13506190 ~ 13508799 (+) True AMCG00012228

Expression Profile