RNA id: TU169712


Basic Information

Item Value
RNA id TU169712
length 686
RNA type TUCP
GC content 0.52
exon number 7
gene id G135146
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12568251 ~ 13426065 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NAGAGTCTGAGGGAGGCGGGTCTGAGGGGCagtgagagcagagagagaagaggagacaCCGTGCAGACACCAGTATCCCCGCTGGCGAGTGAAGCTGAAGTCTCCTCTCCTGTTTGCAGACTCTCTGGTGACTCCTATTCTCCACCCTCCATTCACCTCCAGCACCCAGTAGTGTCTCCCTGAGGTGAAGCTCTCTCTGCTCACGACACAGAGCCTGTAATCAAATCTCTGCTGATTGTCAGGGAGATCCTGTCTGTCTCCATATCTCACTCTCTTCCCATCCTCAGACAGGGTCAGTGCACAGTGTGCTGTATCAGGATCCAGAGTCACATCAGCTGCTCCTCTTCTGGTGATCTACTGGAGAAGAATGGACAAGAAGGAGCTACTATGGACGTTAAAGGctctTCTTATCGAGAGGGACATTGTCAGGCATTGTCGTGAATCAGAATGGCAGTGGCTGTGCAGTGCAGCAGCTGATGTGACTCTGGACCCTGATACAGCACACTGTGAACTGACCCTGTCTGAGGATGGGAAGAGAGTGAGATGTGGAGAGTGGCAGGATCTCACTGACAATCAGCAGAGATTTGTGGATGCCGGTGTTGTGAACAGAGAGAGCTTCACCTCAGGGANNNNNNNNNNGGTGGTGGAGGTGAATGGAGGGTGTAGAATAGGAGTCACCAGAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169743 lncRNA downstream 39980 12792948 ~ 12840313 (-) True G135160
TU169738 lncRNA downstream 78225 12764572 ~ 12802068 (-) True AMCG00012197
TU169709 lncRNA downstream 179178 12687026 ~ 12701115 (-) False G135146
TU169719 lncRNA downstream 179737 12637093 ~ 12700556 (-) False AMCG00012196
TU169722 lncRNA downstream 264967 12614254 ~ 12615326 (-) False G135151
TU169954 lncRNA upstream 184421 13610486 ~ 13635986 (-) False AMCG00012238
TU169996 lncRNA upstream 325845 13751910 ~ 13818084 (-) True G135333
TU170104 lncRNA upstream 428493 13854558 ~ 13856288 (-) True G135405
TU170116 lncRNA upstream 457737 13883802 ~ 13884899 (-) True G135416
TU170117 lncRNA upstream 458864 13884929 ~ 13886535 (-) True G135417
AMCG00012201 mRNA downstream 54540 12806962 ~ 12825753 (-) True AMCG00012201
AMCG00012197 mRNA downstream 103371 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012195 mRNA downstream 123946 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012196 mRNA downstream 179563 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012188 mRNA downstream 238681 12633737 ~ 12641612 (-) True AMCG00012188
AMCG00012232 mRNA upstream 39407 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012230 mRNA upstream 70422 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012234 mRNA upstream 84150 13510215 ~ 13518859 (-) True AMCG00012234
AMCG00012233 mRNA upstream 93601 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012235 mRNA upstream 110130 13536195 ~ 13539367 (-) True AMCG00012235
TU169730 other downstream 176808 12702450 ~ 12703485 (-) True G135152
TU169444 other downstream 657108 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 666494 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 666494 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 760661 12119280 ~ 12119632 (-) False AMCG00012170
TU169875 other upstream 94791 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 96313 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 278781 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 667177 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 1093765 14519830 ~ 14523063 (-) True G135814

Expression Profile