RNA id: TU169722


Basic Information

Item Value
RNA id TU169722
length 815
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G135151
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12578865 ~ 12632059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catgttttcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCGACAGAAaattcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttagCTGATGTGACTCTGGACCCTGAGACAGCAAACTGTGAACTCACCCTGTCTGAGGATGGGAAGAGAGTGAGATATGCAGAGAGGCAGGATCTCCCTGACAATCAGCACAGATTTGATTCCTGGGAGTGTGTCGTGAGCAGAGAGAGCTTCACCTCAGGGAGACACTACTGGGTGGTGGAGGTGAATGGAGGGTGGAGAATAGGAGTCACCAGAGAGTCTGCAAACAGGAGAGGAGTGTTCAGCTTCACTCCCCAGCAGGGATACTGGTGTCTGCAATGTTTGTCTTCTTATCTCTCTGCTCTCACTGACCCTGGGACCCGCCTCCCTCAGACTCTGCGTCCCAGGAtgctgggggtgtgtgtggaTATTGAGGAGAGACGGGTCTCCTTTTACACAGTGGAGTCCAGGGCTCATATCTACACCTTCACTGACATGCACTTCACTGAGGGAGAGAAGATCTATCCAGTCTTTTGGAACTGGGATAGAAACAGAGACCTTGTGATTCTGCCTCCTGTTGAGACTGAAACGGGACATTCATGAGAAAAtcgttattattatgatgatgtcgctctgtggctcctgtgcttctatatatatgttgtaaaaTAAGTGTCTCTAttaattcagttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169716 lncRNA downstream 24447 12566673 ~ 12589807 (-) True G135148
TU169471 lncRNA downstream 251414 12362535 ~ 12362840 (-) True G135008
TU169465 lncRNA downstream 347428 12266603 ~ 12266826 (-) True G135002
TU169392 lncRNA downstream 495662 12118340 ~ 12118592 (-) True G134936
TU169351 lncRNA downstream 596696 12014352 ~ 12017558 (-) True G134899
TU169719 lncRNA upstream 21767 12637093 ~ 12700556 (-) False AMCG00012196
TU169709 lncRNA upstream 71700 12687026 ~ 12701115 (-) False G135146
TU169738 lncRNA upstream 149246 12764572 ~ 12802068 (-) True AMCG00012197
TU169743 lncRNA upstream 177622 12792948 ~ 12840313 (-) True G135160
TU169746 lncRNA upstream 248534 12863860 ~ 12952125 (-) True G135161
AMCG00012185 mRNA downstream 109749 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012184 mRNA downstream 173782 12434496 ~ 12440472 (-) True AMCG00012184
AMCG00012183 mRNA downstream 190911 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012179 mRNA downstream 273836 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012180 mRNA downstream 335012 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012188 mRNA upstream 18411 12633737 ~ 12641612 (-) True AMCG00012188
AMCG00012196 mRNA upstream 84284 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012195 mRNA upstream 105911 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012197 mRNA upstream 152524 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012201 mRNA upstream 191636 12806962 ~ 12825753 (-) True AMCG00012201
TU169444 other downstream 391069 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 400455 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 400455 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 494622 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 512281 12074004 ~ 12101973 (-) True AMCG00012171
TU169690 other upstream 18428 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 87124 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 264967 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 264967 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 279842 12895168 ~ 12911887 (-) True G135164

Expression Profile