RNA id: TU169730


Basic Information

Item Value
RNA id TU169730
length 868
RNA type TUCP
GC content 0.40
exon number 2
gene id G135152
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12702450 ~ 12703485 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNgtcggacatcaaataactatgcaggttagtatttatgtcaaataacttctcgtttgATATATACTGTAGAAGCGCAGGAGCCACAGAGTGACATAAAGCTCGCTTTCTTAAAGAGATACTGCACCACTACTGTAAATGTGTCATAGACAAATACAACATACATGTattctaaataataacataGGCAACAGACTAACTGGCTCATACActataaacacagaaatacactgGAAACTGATCTGAGCTTGTTATTGACACTAATGCCATTGCTTTTAACTATTATTTCAGAACCATAGCagttgcaataataataataataataataataataataataataattattattattattattattattattattattattattattattgatgtccAGTTAAAATATCACTAAATACACACTATAGAGAATATCACAGTGTGAACAGGAGATTATCTGTGTGTTCAATGTATCAGCTGTCAGACTGGCTTCAGTCTCTGATCTGTTTCATCTACAGAGACAACAGGAGGCAGAATCACAAGGTCTCTGTTTCTATCCAAGGTGTGGAAGAAAGGATAGATCTTCTCTCCCTCAGTGAACTGCATGTCAGTGAAGGTGTAGATATGAGCCCTGGACTCCACTGTGTAAAAGGAGACCCGTCTCTCCTCAATGtccacacacacccccagcaTCCTGGGCAGCGGAGTCTGAAGGAGGGGGGTCTGAGGGTCAGTGAGAGCACAGGACCAGATATCAAATCTCTGTGGACAGTCAGGGAGATCCtgcctctctccttctctcactctcttcccATCCTCAGACAGGGTCAGGTCACAGTGTGCTGTATCAGGGTCCAGAGTCACATCAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169709 lncRNA downstream 1335 12687026 ~ 12701115 (-) False G135146
TU169719 lncRNA downstream 1894 12637093 ~ 12700556 (-) False AMCG00012196
TU169728 lncRNA downstream 70391 12578865 ~ 12632059 (-) False G135151
TU169725 lncRNA downstream 72647 12581755 ~ 12629803 (-) False G135151
TU169720 lncRNA downstream 72647 12614254 ~ 12629803 (-) True G135151
TU169738 lncRNA upstream 61087 12764572 ~ 12802068 (-) True AMCG00012197
TU169743 lncRNA upstream 89463 12792948 ~ 12840313 (-) True G135160
TU169746 lncRNA upstream 160375 12863860 ~ 12952125 (-) True G135161
TU169763 lncRNA upstream 384360 13087845 ~ 13101480 (-) True G135172
TU169778 lncRNA upstream 447030 13150515 ~ 13214542 (-) True G135184
AMCG00012196 mRNA downstream 1720 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012188 mRNA downstream 60838 12633737 ~ 12641612 (-) True AMCG00012188
AMCG00012185 mRNA downstream 197945 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012184 mRNA downstream 261978 12434496 ~ 12440472 (-) True AMCG00012184
AMCG00012183 mRNA downstream 279107 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012195 mRNA upstream 17752 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012197 mRNA upstream 64365 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012201 mRNA upstream 103477 12806962 ~ 12825753 (-) True AMCG00012201
AMCG00012202 mRNA upstream 156276 12859761 ~ 12886799 (-) True AMCG00012202
AMCG00012205 mRNA upstream 199772 12903257 ~ 12923677 (-) True AMCG00012205
TU169444 other downstream 479265 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 488651 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 488651 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 582818 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 600477 12074004 ~ 12101973 (-) True AMCG00012171
TU169700 other upstream 176808 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 176808 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 191683 12895168 ~ 12911887 (-) True G135164
TU169761 other upstream 378736 13082221 ~ 13101480 (-) False G135172
TU169764 other upstream 378736 13082221 ~ 13084161 (-) False G135172

Expression Profile