RNA id: TU169743


Basic Information

Item Value
RNA id TU169743
length 2982
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G135160
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12792948 ~ 12840313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCCGCTATCAATCGCTAGTTAGCAGCACTAAGCTAGGTGTCTTAACGTAAGCAGGTCTTCTAGAATACCCTGGAGCTGTGGGAAATCTGAAATAATACGCCCATTGGCTACAAATCCAAATATGATTGGTTGATCAAGTTGTCAATCCAAACATGCCCTCTCATTCAGTTTAATGGGCCGGGCATTCTattgaggaaataaaatacCCTGGATGAACGATATTCTCCCCAGAGAGTCCGTAGAAAAATATCtgatttgttgtattttttcccaacaaaaaaacattcaaatgcacAGTGCatggacagaaaacaagaaacaagtttgcggaattttattttattttatttatagaattcattacggtttttttttttttttcatttttgtatttttttttatttaatgaaaaaacaaaatgtacaccCTCAGCATTTTTCAGAATACCCTAACAGCAATCTTACAGCATAATGTagggaaaaagaagaaaaaacaatcattatttACAATGTGATTGTTTGTGAGAGAAAAGTATCTGTGTTCTCCAATAAGTGAGTTTTGACACTTATCTGCAAATGCTCtgaaaaagtattattaaattacaagcAGATTGTGTGTtactttgtaattaaatattttttatatatagaattCGATTGACATATTccagattttaatattttaacatttaagcCCCTGCTTAAAGTAATACATGCAATTTTTGCTTATAAATCTTATATTTCAGAGGTAGTCCCCTGGCAAAGAGCCGAATAACAGTTGGTTTTGCGGGGGACAAAATGTGATACTTATCACATTGCCTTTGAGGAGAACTGAAGTGAAAGAGCATGTCATAATCTACATTAACTACATACTTGCATGGGTATGAAGGGGTCTAGTGGGAAGTGGTGAGCGACAGTGCTGTCTACCTCGaccaacacacaaaacacaaagtcaAAAATGTCTCATGGTTTGGTTGAGAGGAGCTTGAGGGGtatgacatttttaatatgtaatctTATGACTTTTCCTATACAGGTGTTCACTGTACTTTTCTGATACAGTATTGCAGGTGGAATGTAGAAATGATCAGCCTCCAAATTGAtctaattttgtttctttaaagccGCAGAATCCCAGAAGAATATAAGACCAAGACAAGGATTTGACACCTacaccttttttttattgcatcacTGCATCATAACTGGCAGACGACATGTAAACACAGTCTATCTGATCTTCCATGGAAGCCCAATTTCTACCACAGCTTGTTTTAAAGCTTCAGGTTTGGGCAGGTTTTCAGGTTTTCCATGtgctacattttcattttcatttgacaGCCCAAACTCACGCCAGACTCCTAACCCACCTGAATGGAAATGTGTGAACACCGATCAGGTATCAAGATGGTAGATAGAGTTAGAAGACCAAAGCGAAGAGTGGCAAAGAGGTAAGAAAAGCCCTGTAAGAAAAGTGTGTTTCAAAATCTGTCTGGTCTTAAAATCTCCTAAGATTGTAGGCCCTAGTTCGTTATGGCTTGCATTCGGTAATATGCACactgtacaaaatcaacagatAATCCcgtcacacacaaatatttctaataataaaaaggtgCACTATCCCTCTCCCCTACCATCCACATTTACAGAgcctccccccacccctacAATCCCATCCCAGAGTCTAAGGTCAGGAAGATCACATTGGAAACTGAATTAGTTTTATAGAAGAGTCACAATGAATTTATGATGTGTTATTGGTAAAGACAGTTGTCCATACAGattggagagaaacaaaatgagcTACAGCCAGTTGGTTTTGGTGTGATCTCAACCTAGATTGAATGGTGATTCTCTGATGGACTCTACATGTCGGGCTCTGAAATACAAAGAGATCGCaacattaaataactatatatttttcttaaaccaGGGAGCAATACAATAATATCAGGGTCTATCAGTTACCTCTATGAACATTAAAAGTACACCTAAAAATGCCCTGACACAAATATGGTTGTTGATTTTGAGTCAGGCTTTAATACTCCAATTTAAACCTACTTTTCACTGCTGCagacagttttcttttaaataattatttcaaaatgactgACACATTTTACTGAAGAGCAGAtgtcagacagagacagagtaTTCTGATCTTTCACTCAGTTACTTCCTTATTTATGTGGCTTATGCGAGATTATCAGATCTTATTTGTACAGgtaatcatttaaaacatggtGATTTCAGACAAAACATTGCAGAGTCTGGCGAGGATTGAGGTAGAAAATGcagcactgcaacaccaactaGAAGCCACTACAGCTCTCTGAGACTGGACACTGTAACCCTGGTTTCAAAGCACAGCATCTGGCACGACTGACGCTCCTGAATGCTGCCAATGCACTGAAGTCCTGAATTGGGGTCAGCCAACCCTTGACTGGGAGAGCCACACTGCTTTCTGGGTCTTTTGCTGCTTAATAGAGCTAGTTTATGGGCTTTGTTGGTCAAAGTTTCCACATGTTCAAGGTGTCCAGCGAGGGTTAACTGAGAGTGGGAAAACTGCAGGACAGTGGCTGTCACCCCCCCCGGCCAGTTCTGGATCCACTGAAAGAGGGAGTATAGAACAGGCAGAAGTGTCTCACCCCAATTGTAGGTCTTGCCCTCGGGGATGGTGCTGTGTGTCACTCTGCAGGAGTACTCATCACCCTTCTTGGGAGTGAAGGGCGCAGTCTTGGTCAGGTGGAAGCGCCAGCCCTGCTCGAATGCCAGGTCGGACTGCTTGAAGTCAGTGATGGGGTGTCCATCCTTCAGCAGGTCGATCTTGATGTCAGGGGGGTGGAAGCCGCTGACGTGGCAGATCAGGGTGTTATCCTTGTCGAACTCGCCTGGGTTGCGGCTGTACACCTGCACCTTGGGCATTGCTGTGAATGTACAGAAGAGGCACAGAGAGCTGGGGTCAATTATAGTTGCAA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169707 lncRNA downstream 76838 12568251 ~ 12716110 (-) False G135146
TU169709 lncRNA downstream 91833 12687026 ~ 12701115 (-) False G135146
TU169719 lncRNA downstream 92392 12637093 ~ 12700556 (-) False AMCG00012196
TU169728 lncRNA downstream 160889 12578865 ~ 12632059 (-) False G135151
TU169725 lncRNA downstream 163145 12581755 ~ 12629803 (-) False G135151
TU169746 lncRNA upstream 23547 12863860 ~ 12952125 (-) True G135161
TU169763 lncRNA upstream 247532 13087845 ~ 13101480 (-) True G135172
TU169778 lncRNA upstream 310202 13150515 ~ 13214542 (-) True G135184
TU169792 lncRNA upstream 430499 13270812 ~ 13279294 (-) True G135193
TU169812 lncRNA upstream 481418 13321731 ~ 13329044 (-) True G135202
AMCG00012197 mRNA downstream 16026 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012195 mRNA downstream 36601 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012196 mRNA downstream 92218 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012188 mRNA downstream 151336 12633737 ~ 12641612 (-) True AMCG00012188
AMCG00012185 mRNA downstream 288443 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012202 mRNA upstream 19448 12859761 ~ 12886799 (-) True AMCG00012202
AMCG00012205 mRNA upstream 62944 12903257 ~ 12923677 (-) True AMCG00012205
AMCG00012204 mRNA upstream 89474 12929787 ~ 12938820 (-) True AMCG00012204
AMCG00012203 mRNA upstream 114692 12955005 ~ 12960892 (-) True AMCG00012203
AMCG00012208 mRNA upstream 142016 12982329 ~ 12992699 (-) True AMCG00012208
TU169730 other downstream 89463 12702450 ~ 12703485 (-) True G135152
TU169444 other downstream 569763 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 579149 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 579149 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 673316 12119280 ~ 12119632 (-) False AMCG00012170
TU169700 other upstream 39980 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 39980 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 54855 12895168 ~ 12911887 (-) True G135164
TU169761 other upstream 241908 13082221 ~ 13101480 (-) False G135172
TU169764 other upstream 241908 13082221 ~ 13084161 (-) False G135172

Expression Profile