RNA id: TU169763


Basic Information

Item Value
RNA id TU169763
length 2565
lncRNA type sense_over
GC content 0.42
exon number 4
gene id G135172
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13082221 ~ 13101480 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTAAATGACAgtatgttcttttgtttgtcagtttaactataaaaataaataatttccttgttttgcaTGACACAGAGCGAGTCTGGGTATAAAGGGAAGATGTCTGTGCTAGTCGCCTCAAAAAACTGATGCCGCTCATCGTTGGAGTAAGAAACAAGGCCAGTGTTGCTGAGACTGCAGAGAGATGAAGAGTTCACTGATTgtggctgctgtgctgctgctggcGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGGGGGAGCGGCCAGAGATGCACTCGCACCGTGGAGACGTGTCTGGGCTCCAATGATGCCTGCGTCAGCGCCATCTTCCTCCCACCCACCTCTGGTTTCTTCCAGAGATGTGGCAAATCATCTGAGTGTGCCTTATACAGCACCACTAATTTAATCCAAGCCCGATGCTGCAACAGGGACCTCTGTAACTGAGTGACCAAGCTAAAATCCGATACAAATTTCTAAGAAACAGTGGAATTGACAGTAAATATCTTAACAAGCAAATataaagggtgtgtgtgtgtggtatgtggttgtggtggtggtggtggtgggaggGGGGTTAGAAAGTTGTGCCAGAGGGGAACTCTATGGCTGGGGTTGggggagtggagagagaggcgGGGGTGTAAAGGTGTTCTGTTTGTATGTCTGTAACTCTCAATCTATTATCAGGGAAAGCTTGTAATCCTCTCTTCAGCCTGATTCTGTCATGTTGGTGAAATAAACTGCAGTTCAATGTAAACCACATTGCCTAGCTTATGATGTACACTGTTCGGACTGCTGTGGAATAATGTAATCAAAGCTTTGTTTGagtatttcatttgaattagcATTATCTTTAAACACAAGTTTAGTTAATCTCTATCCCTATTTTGTTGAACTGTAAATTTGCTTCACTGGATAACTTGCTTTTTGCAAAAAATCTTTTTGTTTCTAATTCTGTGATTTTGTTGAGGTTAGTGTGACACCGCAGAGCTGACAGTTCTCCTCATTGAGACATTTGAAATTGAGTCCAAAAAGTACATTCCCTGGATAAAGGTTTAAATACACACTACATATCAACAAGGGCCATATAAGAGACATTTTCTCAATGCTGGAGATgctgtggaagaacaatcagGTTAGAGcattagttgcaatgcctttaatacacgcagcgtggagaggaacagtgaatcaagaagatcccaaagtcgctctgccttcatttaaaagtcagaggcttttatacacaaaaaacaaagatctggttacaatcacaaaagtcattactatattatcttagagagttagctaagcagaatatatatcattataagacagagttcataggtcaacacatggattagggagcaggcacttcaatcatactgtttgacattgtctccaagattctcattgtaaataacaaacagaaatcaagcttccttctggcctgtccttctggcttgaccttatctttcttaagtatacaagtgagtaaaacaggtatgagagagaatttctaactttccttccacaatGCTCAACCCTGGACTTTCAACGCCTGAGACTTTGACCTGTCAAGTACATAATTCATGATGGCATTCATATCTTCACATTAAATTAtcacattaaacacattaaatcaaattatcaCAGTATCACATTAAATTCTGTAAATTCCAGGAGCAGTTTTGTAATTGATTCACTGTCCAGCTTACAAAGTGTGCTATGACAATTATTACTGACTGCAATACAGTAATCCGAGACTCCTGTATCATAGCAACATTTCTCCTATGCAGCGAATTGTTGGGTTACTATatttatctgagaaagagaatacTATCTAAAGGGGGGTGGGATATCACTCGTTACCATGGGAACTCATTCATGCATTGTCTAACAATGAGTGCACAGGCCTATAGGGTGCTGTGTGTTGTCACTCAGGCAGACCCCTCCTCTGTCTGCTTCAACTAGTACAGAGCACAGCCTCTTTTAACCAAAGCCAAGGCTCACACGTGACCTCCCAGGCTTTCAGTAGTATGCTCTCTGTCAGAAAACTGGgtttgcattcacaacctatcattccCTTTTGTATTCCCGAGAAAACTACCGAAAGGGGGATGGGGTACAGTATATCCAAGCCGTTATGAGGGAGGCCAGTGTTGCACAGcctgtaatgtattaaaataaaaccaaaaacgaCAGGCAGTGCGAGCTTCAATGCAATGTGTTTATTCCTTGATTTCCATCATCGAAAACTGCTCACGTCTGCCACAGAATGGTTCTTTTAGGTACTGCGCTAGTGCCGCCAATATTCGAttagcaaaaaaagaaaatgcatttaaaaaaaaaaaatagtgccCCCCTCTGTCTTGTTGTTCAGTTGTACATTTGCCCCACACCAGCAGCAACAGTTAAGGGAGCCAGCCCAGAGGCCACACCCTGCTAGGGTATGAGGCATCAGCTTAAGAACAATAGGAAAGGTGACAGGGAATAAATAGAAACCAGCACACCAATAATCAATGGACCAATAGCAGGGGCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169746 lncRNA downstream 135720 12863860 ~ 12952125 (-) True G135161
TU169743 lncRNA downstream 247532 12792948 ~ 12840313 (-) True G135160
TU169738 lncRNA downstream 285777 12764572 ~ 12802068 (-) True AMCG00012197
TU169709 lncRNA downstream 386730 12687026 ~ 12701115 (-) False G135146
TU169719 lncRNA downstream 387289 12637093 ~ 12700556 (-) False AMCG00012196
TU169778 lncRNA upstream 49035 13150515 ~ 13214542 (-) True G135184
TU169792 lncRNA upstream 169332 13270812 ~ 13279294 (-) True G135193
TU169812 lncRNA upstream 220251 13321731 ~ 13329044 (-) True G135202
TU169837 lncRNA upstream 315925 13417405 ~ 13418804 (-) True G135217
TU169686 lncRNA upstream 320955 13422435 ~ 13425998 (-) True G135146
AMCG00012215 mRNA downstream 3780 13082423 ~ 13084065 (-) True AMCG00012215
AMCG00012208 mRNA downstream 95146 12982329 ~ 12992699 (-) True AMCG00012208
AMCG00012203 mRNA downstream 126953 12955005 ~ 12960892 (-) True AMCG00012203
AMCG00012204 mRNA downstream 149025 12929787 ~ 12938820 (-) True AMCG00012204
AMCG00012205 mRNA downstream 164168 12903257 ~ 12923677 (-) True AMCG00012205
AMCG00012214 mRNA upstream 34263 13135743 ~ 13143480 (-) True AMCG00012214
AMCG00012221 mRNA upstream 54217 13155697 ~ 13162263 (-) True AMCG00012221
AMCG00012219 mRNA upstream 106611 13208091 ~ 13222556 (-) True AMCG00012219
AMCG00012222 mRNA upstream 130142 13231622 ~ 13232389 (-) True AMCG00012222
AMCG00012220 mRNA upstream 157930 13259410 ~ 13266847 (-) True AMCG00012220
TU169764 other downstream 3684 13082221 ~ 13084161 (-) False G135172
TU169765 other downstream 3684 13082221 ~ 13084161 (-) False G135172
TU169700 other downstream 97214 12880293 ~ 12990631 (-) False G135146
TU169690 other downstream 126923 12633754 ~ 12960922 (-) False G135146
TU169749 other downstream 175958 12895168 ~ 12911887 (-) True G135164
TU169786 other upstream 130192 13231672 ~ 13232344 (-) False AMCG00012222
TU169801 other upstream 196964 13298444 ~ 13299436 (-) False AMCG00012226
TU169875 other upstream 419376 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 420898 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 603366 13704846 ~ 13705612 (-) True G135318

Expression Profile