RNA id: TU169765


Basic Information

Item Value
RNA id TU169765
length 1204
RNA type TUCP
GC content 0.42
exon number 3
gene id G135172
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13082221 ~ 13101480 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTTGGATGTGCACCTGGGGTGCCGATATGTATCTCCCGGTACAGATTGCTACTATGTCCGCATTCCGCTTTTTGTTCTCATAAgatgtaaatacaattttcagcTCGGACCAGATAGCTGATAAAACAAGCCCGTCTAATGCAACATAttcccttatttattttcagaaagagaatatataaaggaaagcaaaatgtgtttgaatacataacatttcttaattgaagtacatttaattgaagttaaCCAGTGAACGGGAATCCCATTGCAACATCACAGCTCTGGATACCGGCGTCTTTACAGAGTCGTCCGCTGCTGTTGACTAATGCACTGtgttctctgtgtttaaaaacagtATGTTCTTTGGCGgaaattagtttgtttgtttgtttcgtaaaaataaacacttcgTTTTGCAAGACACATATCGAGTCCCGGTATAAAGAGAGCATGTGCCGCTCAGCATTGGAGAGAGGAAGGCCAGAGTATTCATTCGTACGTATTGTCTTTTAATGTCATGTTGAGTTGTAGCATATATATAGAACTTAGTGCATACAATTACCTTTGCACCACcacttaaaaacatatacacatgtAATTCGATTGTATTtttgatgatgatattattatttattataactattaataataatggctgTATGATTAACACGTGTACTCAAGGCCAGTGTTGCTGAGACTACAGAGAGATGAAGAGTTCACTGATTGTGGCTACTGTGCTGCTGCTGGCGCTGAGCTGTGGGGACGCTCTGCGCTGCTATAAATGTCTGGCAGGAGGGAGAGGCCAGAGATGCACTCGCACCGTGGAGACGTGTTACAGCTCTAATGATGTCTGCATCAGCGCCTACTTCCTCCCACCCGCCTCTGGTTTCTTCCAGAGATGTGGCAAGTCGTCTGAGTGTGCCATATACAGCACCAATCAAATAATCCAAGCCCACTGCTGCTACAGCGACCTCTGTAACTGAGTGACAAGGGTgggatggggatgggggtgggggttgtaaAGGTCCATTATCAGTCAAGCTTGGGAACCTCTCTTGAGCCTGATTCTGTGACATTGTTGAAATAAACTGCACTGAAACAGAGTACACATTGTCTCACTTGTGCCTTTCTCCTTTCTTGTGTCAATCATGCATTTTCATAGATAGATGCATGCATAGTATACATAGATCAAcagatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169746 lncRNA downstream 130096 12863860 ~ 12952125 (-) True G135161
TU169743 lncRNA downstream 241908 12792948 ~ 12840313 (-) True G135160
TU169738 lncRNA downstream 280153 12764572 ~ 12802068 (-) True AMCG00012197
TU169709 lncRNA downstream 381106 12687026 ~ 12701115 (-) False G135146
TU169719 lncRNA downstream 381665 12637093 ~ 12700556 (-) False AMCG00012196
TU169763 lncRNA upstream 3684 13087845 ~ 13101480 (-) True G135172
TU169778 lncRNA upstream 66354 13150515 ~ 13214542 (-) True G135184
TU169792 lncRNA upstream 186651 13270812 ~ 13279294 (-) True G135193
TU169812 lncRNA upstream 237570 13321731 ~ 13329044 (-) True G135202
TU169837 lncRNA upstream 333244 13417405 ~ 13418804 (-) True G135217
AMCG00012208 mRNA downstream 89522 12982329 ~ 12992699 (-) True AMCG00012208
AMCG00012203 mRNA downstream 121329 12955005 ~ 12960892 (-) True AMCG00012203
AMCG00012204 mRNA downstream 143401 12929787 ~ 12938820 (-) True AMCG00012204
AMCG00012205 mRNA downstream 158544 12903257 ~ 12923677 (-) True AMCG00012205
AMCG00012202 mRNA downstream 195422 12859761 ~ 12886799 (-) True AMCG00012202
AMCG00012216 mRNA upstream 3812 13087973 ~ 13101374 (-) True AMCG00012216
AMCG00012214 mRNA upstream 51582 13135743 ~ 13143480 (-) True AMCG00012214
AMCG00012221 mRNA upstream 71536 13155697 ~ 13162263 (-) True AMCG00012221
AMCG00012219 mRNA upstream 123930 13208091 ~ 13222556 (-) True AMCG00012219
AMCG00012222 mRNA upstream 147461 13231622 ~ 13232389 (-) True AMCG00012222
TU169700 other downstream 91590 12880293 ~ 12990631 (-) False G135146
TU169690 other downstream 121299 12633754 ~ 12960922 (-) False G135146
TU169749 other downstream 170334 12895168 ~ 12911887 (-) True G135164
TU169730 other downstream 378736 12702450 ~ 12703485 (-) True G135152
TU169444 other downstream 859036 12221205 ~ 12223185 (-) True G134981
TU169786 other upstream 147511 13231672 ~ 13232344 (-) False AMCG00012222
TU169801 other upstream 214283 13298444 ~ 13299436 (-) False AMCG00012226
TU169875 other upstream 436695 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 438217 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 620685 13704846 ~ 13705612 (-) True G135318

Expression Profile