RNA id: TU169778


Basic Information

Item Value
RNA id TU169778
length 242
lncRNA type read_through
GC content 0.45
exon number 2
gene id G135184
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13150515 ~ 13214542 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAAAGTTTAccaacgagaggaggccattaataactgagtgatgcaaggatcccatccagtctgtttttaaatgttcccaaactttcagcttcaaccacatcgctggggagtttgttcagattgtgacaactctctgtgaagaagtgtctcctgttttatgtcttgaatgccttgaagcccaatttgcatttgtgtccccggatgcgtgtgtccctgctgatctggaaaagctcctctggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169763 lncRNA downstream 49035 13087845 ~ 13101480 (-) True G135172
TU169746 lncRNA downstream 198390 12863860 ~ 12952125 (-) True G135161
TU169743 lncRNA downstream 310202 12792948 ~ 12840313 (-) True G135160
TU169738 lncRNA downstream 348447 12764572 ~ 12802068 (-) True AMCG00012197
TU169709 lncRNA downstream 449400 12687026 ~ 12701115 (-) False G135146
TU169792 lncRNA upstream 56270 13270812 ~ 13279294 (-) True G135193
TU169812 lncRNA upstream 107189 13321731 ~ 13329044 (-) True G135202
TU169837 lncRNA upstream 202863 13417405 ~ 13418804 (-) True G135217
TU169686 lncRNA upstream 207893 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA upstream 207893 13422435 ~ 13425998 (-) False G135146
AMCG00012214 mRNA downstream 7035 13135743 ~ 13143480 (-) True AMCG00012214
AMCG00012216 mRNA downstream 49141 13087973 ~ 13101374 (-) True AMCG00012216
AMCG00012215 mRNA downstream 66450 13082423 ~ 13084065 (-) True AMCG00012215
AMCG00012208 mRNA downstream 157816 12982329 ~ 12992699 (-) True AMCG00012208
AMCG00012203 mRNA downstream 189623 12955005 ~ 12960892 (-) True AMCG00012203
AMCG00012222 mRNA upstream 17080 13231622 ~ 13232389 (-) True AMCG00012222
AMCG00012220 mRNA upstream 44868 13259410 ~ 13266847 (-) True AMCG00012220
AMCG00012225 mRNA upstream 66554 13281096 ~ 13291869 (-) True AMCG00012225
AMCG00012226 mRNA upstream 81877 13296419 ~ 13300421 (-) True AMCG00012226
AMCG00012232 mRNA upstream 250930 13465472 ~ 13486579 (-) True AMCG00012232
TU169761 other downstream 49035 13082221 ~ 13101480 (-) False G135172
TU169764 other downstream 66354 13082221 ~ 13084161 (-) False G135172
TU169765 other downstream 66354 13082221 ~ 13084161 (-) False G135172
TU169700 other downstream 159884 12880293 ~ 12990631 (-) False G135146
TU169690 other downstream 189593 12633754 ~ 12960922 (-) False G135146
TU169786 other upstream 17130 13231672 ~ 13232344 (-) False AMCG00012222
TU169801 other upstream 83902 13298444 ~ 13299436 (-) False AMCG00012226
TU169875 other upstream 306314 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 307836 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 490304 13704846 ~ 13705612 (-) True G135318

Expression Profile