RNA id: TU169792


Basic Information

Item Value
RNA id TU169792
length 688
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G135193
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13270812 ~ 13279294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACGCATGCACctattttattgtaaaagtcACATTTCCTCTTTTCAtctgttacaaaaatatatgtttataagaCTTACAAAATAGACTGAAACATTTTAGCAGATGAGCAttatatgttatttaaattgtcAAGTGCTAAAATTGCTGTGTAGGGGATGTAGTGTGTGTTTAATACCACCAGCATTGTAAGGTATACATTATAAAGCATACAGGTGTGGTAGTAAAGGTCTTGCATGTAGTGGTTAAAGAAACAGTGCTGGTGACAATACATACAATGGCCTGTAGGTGGCGCCAACTCTTACATGAGGCCCAATATAAAACTTACTAAAACAAGACTTATTTATCAAGCCTTCATGCTGAATACAATACCGCCCATTTCATCACAATGAACACAAAGGTACAGATCTGATTCTAGTCATGTCACATTGGAAGaaacgacaacaaaaataataagaaataattcCTGAAGCAAGTGTAAAACGTGTATGAATTTCTAAACAGTGACATGATGGGTAGTATAGCTTATTATTTCAGGAGGTGTAACAGGTGGATCTGGCAAATCTCAGTAAGAATAATCAGATTTGGGGCTTAATGCATTTGCAGGATTCACATACTTAACACTGTATTCACTCCTGTTCACATATTGGTTGTGTtgcatacagtgcatccagaaaACACTCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169778 lncRNA downstream 56270 13150515 ~ 13214542 (-) True G135184
TU169763 lncRNA downstream 169332 13087845 ~ 13101480 (-) True G135172
TU169746 lncRNA downstream 318687 12863860 ~ 12952125 (-) True G135161
TU169743 lncRNA downstream 430499 12792948 ~ 12840313 (-) True G135160
TU169738 lncRNA downstream 468744 12764572 ~ 12802068 (-) True AMCG00012197
TU169812 lncRNA upstream 42437 13321731 ~ 13329044 (-) True G135202
TU169837 lncRNA upstream 138111 13417405 ~ 13418804 (-) True G135217
TU169686 lncRNA upstream 143141 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA upstream 143141 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA upstream 143141 13422435 ~ 13425998 (-) False G135146
AMCG00012220 mRNA downstream 3965 13259410 ~ 13266847 (-) True AMCG00012220
AMCG00012222 mRNA downstream 38423 13231622 ~ 13232389 (-) True AMCG00012222
AMCG00012219 mRNA downstream 48256 13208091 ~ 13222556 (-) True AMCG00012219
AMCG00012221 mRNA downstream 108549 13155697 ~ 13162263 (-) True AMCG00012221
AMCG00012214 mRNA downstream 127332 13135743 ~ 13143480 (-) True AMCG00012214
AMCG00012225 mRNA upstream 1802 13281096 ~ 13291869 (-) True AMCG00012225
AMCG00012226 mRNA upstream 17125 13296419 ~ 13300421 (-) True AMCG00012226
AMCG00012232 mRNA upstream 186178 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012230 mRNA upstream 217193 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012234 mRNA upstream 230921 13510215 ~ 13518859 (-) True AMCG00012234
TU169786 other downstream 38468 13231672 ~ 13232344 (-) False AMCG00012222
TU169761 other downstream 169332 13082221 ~ 13101480 (-) False G135172
TU169764 other downstream 186651 13082221 ~ 13084161 (-) False G135172
TU169765 other downstream 186651 13082221 ~ 13084161 (-) False G135172
TU169700 other downstream 280181 12880293 ~ 12990631 (-) False G135146
TU169801 other upstream 19150 13298444 ~ 13299436 (-) False AMCG00012226
TU169875 other upstream 241562 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 243084 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 425552 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 813948 14093242 ~ 14094688 (-) True AMCG00012261

Expression Profile