RNA id: TU169812


Basic Information

Item Value
RNA id TU169812
length 2183
lncRNA type inter_gene
GC content 0.50
exon number 6
gene id G135202
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13321731 ~ 13329044 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGTTCGTCCCATAATGCGCGCAAAGCATCATGGTATGTAGGAATATGATGGATAGGAAAGAACTCATTgtaatcccacaatgcaccactCCAGGAAAGATGGGTTTTCGAACATGAAATTGGCGGAGTTGACTATCTTGTCTAGATAGAGGGACTTCGCAGCTGGGAAAAGCTGTGCAACTTTCTGCTCTATTGTTCACCCGAGAGCCCTGGccctgtgtgagagagggagggagacggaGTTGTCTCTGCTTTGTGGATCCACTGGCTCTAAACACACAGCTCAGCTGGGGGAGACTGAGGCAGAAGTGCAACAGAAGATCCAGGACAGACTGAAGAAGGTGGAGGAGATCAGACAAGCGGTGGAGCTCAGCAGACTTGGAGCCCAGAGAGAGGCTGAGGACAGTGAGCAGGTCTTCAGGGCTCTGGTGTGCTCCATTGAGAGAAGCCAGGCTGAGCTGCTGGAGCTGATTGAGGAGAAGCAGAGAGCGGTGGAGAGGCGGGCTGAAGGGCTCATTGaagagctggagcaggagatCACTGAGCTGGAGAGGAGACGCACTGAGCTGGAGCAgctctcacacactgaggaCCACATCCACTTCATACAGAGTCTCCCAGCCCTGCGCCCCCCTCCACACACCAAGGACTGGTCTGACGTcactgtgacctctgacctctgtctGGAGGCAGCTGGAGCAGAGACTCAGGGAGGGACTTGAGGAGCTGCCAGAGATCAAGCTGAAGACGATCCAGCAGTGtgcagTGGATGTGACTCTGGACCCCAATACAGCTCATCCCCATCTCATCCTGTCTGAGGATGGGAAACAAGTGAGACATGGAGACAAACGACAGGCTCTCCCTGACAATCCAAGGAGATTTGATCCATGTCCCTGTGTCCTGGGAAAGGAGGGTTTCAGTTCAGGGAGACACTACTGgcaggtggaggtggggggtgtgACTGACTGGGCTTTAGGAGTCGCCAAACAATCCATCAACAGGAAGAAGCGGATTACACTGAGCCCCAAGCGTGGTTACTGGACTGTGTGGCTGAAGAATGGGAATGAATACAGGGCTCTTGTTAGCAACTCCCTACTCCTCCCCCTGAGCCTGAAGCCCCAGACGGTGGGGGTGTTTGTGGATTATGAGGGGGGGCAGGTCTCCTTTTACAATGTGGAGGCCAGGTCTCATATCTACACTTTCACTGACACCTTCACAGAGAAACTCTATCCATACTTCAGCCCTGGTCTCAATAATGGAGGTGAAAACGCAGCCCCACTGATCATCTCTCCTGTCCGTCCCACAGACTGAAGGAGGCAGATCCTCTGTGGGGGGGCAGCAGGAGCAGTAGCCAGTGAGAGTAATAACAGTGAGATTCAGATCAGTGCTCTCCAGCCCCAGAGGGAGTCATTCAGGGTGTGAGGGCCGTCAGTCACAGATCAGGCGCTGCTGTCTGTGAGCCCCACACTGGTGTAGAGCAGCGAGGAGCTCAGAGCCGACACactgaaggctgttcaaacCCTCAGACTGATGGCTGCTTTTGTGAGCGGCTTCCCTCTGCTTACTTAAAGGCAGCCTGGACTCTGTTATGGCTCTGTCATCAAGTCATGCGTAATGCCAGATTCCCTATTTTCTGTGAACTCAGTTGTCATACTGACATAGGAGTAAATATTAGGTGGTGTCAAAGGTCAAAGTTCATGCTGATGTAGAGTCCTTGATTTGTAAGCTTCTGCTTTGACAAACTTTTCCATTGGAATCTGTAATTTTGCAGAATAACTCTCTCAAATGAAGCCTTTGCTGTGAGTGGAGATTGAAAGATTCTTACGGACACAACTACATAATAGAATTAGTTTTAATCTGTAAAAGTCCCTCAGTCTCAGGACTGATGATGTACAGTACTATCTCTGTGATACTTATGAATGTTTTAATAGCTAaggtttgaaatgtttattttctatagtAAGCATTCACTGTCAATAAACCATTGTCCATAATACCACTGTAGTATATTCAGTTGTAACAGTGCTCCGGAGATGGCCGTTCAGGAAGACTAGggtaaagtttttctaaagaacatgctATCTTATAGATGACTCCCTGGTTACCTACATGATGTCAATGATGAACCCCAAACTTTATCATGGActtctttgtcttctgttctctttaTTGCCTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169792 lncRNA downstream 42437 13270812 ~ 13279294 (-) True G135193
TU169778 lncRNA downstream 107189 13150515 ~ 13214542 (-) True G135184
TU169763 lncRNA downstream 220251 13087845 ~ 13101480 (-) True G135172
TU169746 lncRNA downstream 369606 12863860 ~ 12952125 (-) True G135161
TU169743 lncRNA downstream 481418 12792948 ~ 12840313 (-) True G135160
TU169837 lncRNA upstream 88361 13417405 ~ 13418804 (-) True G135217
TU169686 lncRNA upstream 93391 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA upstream 93391 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA upstream 93391 13422435 ~ 13425998 (-) False G135146
TU169954 lncRNA upstream 281442 13610486 ~ 13635986 (-) False AMCG00012238
AMCG00012226 mRNA downstream 21310 13296419 ~ 13300421 (-) True AMCG00012226
AMCG00012225 mRNA downstream 29862 13281096 ~ 13291869 (-) True AMCG00012225
AMCG00012220 mRNA downstream 54884 13259410 ~ 13266847 (-) True AMCG00012220
AMCG00012222 mRNA downstream 89342 13231622 ~ 13232389 (-) True AMCG00012222
AMCG00012219 mRNA downstream 99175 13208091 ~ 13222556 (-) True AMCG00012219
AMCG00012232 mRNA upstream 136428 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012230 mRNA upstream 167443 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012234 mRNA upstream 181171 13510215 ~ 13518859 (-) True AMCG00012234
AMCG00012233 mRNA upstream 190622 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012235 mRNA upstream 207151 13536195 ~ 13539367 (-) True AMCG00012235
TU169801 other downstream 22295 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 89387 13231672 ~ 13232344 (-) False AMCG00012222
TU169761 other downstream 220251 13082221 ~ 13101480 (-) False G135172
TU169764 other downstream 237570 13082221 ~ 13084161 (-) False G135172
TU169765 other downstream 237570 13082221 ~ 13084161 (-) False G135172
TU169875 other upstream 191812 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 193334 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 375802 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 764198 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 1190786 14519830 ~ 14523063 (-) True G135814

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027570 False 1685 mRNA 0.45 6 NC_007130.7 4061699 ~ 4065250 (+)
grasscarp (Ctenopharyngodon idella) CI01000319_03197800_03232263.mRNA True 1528 mRNA 0.44 9 CI01000319 3197761 ~ 3232441 (-)