RNA id: TU169873



Basic Information


Item Value
RNA id TU169873
length 1074
RNA type TUCP
GC content 0.62
exon number 1
gene id G135240
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13519421 ~ 13520494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTTTATTATAGTTTGTGACTCAGCATGATTGGCAGCTTCCAGGACCCCCCCCCATCATGGCAGCTCACTATATACAGTGCAGGGAGGCCGTTATACTATGTACACTATTTACAGTGCGTGTCAGACACCAGGGTCAGTGTGTGTCCGACTcctttctgtctgtcagtcCATCTGTCCGTCTCAGTTAGTCTCAGTAGGTCTTtgggtcagtcagtcagtctttcCCGGtcattcactctctctctcagttcaggGCTTGTGTGACCAGCGTGTGGATATCGTCTCTCAGCTGCTGGGCACAGTGCACCAGGTCAGAGAGCTGTGCCAGGCCGGTGGCGGGCAGAGGGTGCGGCAGTGGGGGCTGGGAGGCCAGCAGTCGTATCAGGCAGTGCCGGCCCAGCCCGGGGTACCCGTGGCGCTGACAGAAGCGGTACATGGAGGGCAGGGAGACGATCAGGGGGGCCGACTCCAGGGGGCGGTCTGAATCCAACGCAGAAGCCACTGCGCATTCGAGCCCGCAGTCTGACCCAGACCCCGATGTGGACTGAGTGTCTGGGTCCAGTACCAGGTCTGACTGTAGCCTGCACTCCAGTTCTGATCCAGACTCGGAGCTGGTTCGGGTTCTGGAGTTCCGGGCCGATCCAGATGGGGTCCGGGATTCCGTCCCAGAGCCAGGTCGGGGTGAAGGTTCGGCTCTGGTGCCCCGGATCGCTCCGGAGTCCGACGCCAGTCCCAATCCTGGCTGGCTCTCTGCTGCCACAGCCTGTGATATCGCTGCCGCTTTGGGTGCTTTGCCGTGTTCTGACCCAGATTGCGGCTCCGATCCCGTACACTCGGGTTCCAGCCCCATCCCCTTCCCCACTCGGGCAGCAGTGCTCAAGAGTGCCCCCTGGTGTCCCAGCAGAGACACGCACAGCTGCTCCAGCTCCCCCTGCAGGCCAGGCACCAGGAAGCGGCTGGCCCCCTGCATGGCACAGGCCAGGGGACAGGGGCCTCCCACACCTGCCTCCGTCTCCATGCCCTGTGcaccttcctcctcttcttcctcctcttcctcctcctcctcctcctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169849 lncRNA upstream 34943 13477562 ~ 13484478 (+) True G135226
TU169675 lncRNA upstream 91422 13427351 ~ 13427999 (+) True G135138
TU169673 lncRNA upstream 98370 13417405 ~ 13421051 (+) True G135137
TU169667 lncRNA upstream 121785 13372603 ~ 13397636 (+) True G135131
TU169639 lncRNA upstream 221221 13293619 ~ 13298200 (+) True G135117
TU169884 lncRNA downstream 10278 13530772 ~ 13531293 (+) False G135250
TU169885 lncRNA downstream 10278 13530772 ~ 13531293 (+) True G135250
TU169892 lncRNA downstream 12204 13532698 ~ 13587530 (+) True G135255
TU169893 lncRNA downstream 12204 13532698 ~ 13625360 (+) False G135255
TU169896 lncRNA downstream 16752 13537246 ~ 13541117 (+) True G135257
AMCG00012228 mRNA upstream 10622 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012224 mRNA upstream 196032 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012223 mRNA upstream 211898 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012217 mRNA upstream 242454 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012218 mRNA upstream 317029 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012227 mRNA downstream 5190 13525684 ~ 13527970 (+) True AMCG00012227
AMCG00012236 mRNA downstream 20659 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012229 mRNA downstream 29560 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012242 mRNA downstream 175596 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012241 mRNA downstream 220745 13741239 ~ 13743991 (+) True AMCG00012241
TU169846 other upstream 10622 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other upstream 10622 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other upstream 10622 13506190 ~ 13508799 (+) True AMCG00012228
TU169557 other upstream 94062 13422435 ~ 13425359 (+) True G135058
TU169632 other upstream 242450 13269196 ~ 13276971 (+) True AMCG00012217
TU169904 other downstream 63776 13584270 ~ 13585916 (+) True G135264
TU169982 other downstream 286719 13807213 ~ 13813756 (+) False AMCG00012245
TU170021 other downstream 329884 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 541743 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 726269 14246763 ~ 14295415 (+) True AMCG00012268

Expression Profile