RNA id: TU169892


Basic Information

Item Value
RNA id TU169892
length 2946
lncRNA type read_through
GC content 0.43
exon number 2
gene id G135255
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13532698 ~ 13625360 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATGAAAAAGgcattcttgtttttattggaCTGGATACAGGCTCTTACAGCAGGTCCTGATACACTGCAGCACGTTCAAAAGAGAGGATCAACTTTTTAAAGTGGCAAACCGATCAGTCAGTCAGCAGTCAATCTCTaaccctctctgtgtgtgtgtgtgtaaatagaAGTCATGCAGCTCTAAAATACTACAGGTGGGCCACCACAGAATATCAatgacacacccacacactccaCACTCCTGCAACCActaccaaataataataataataataataataataattattatgtaaatagACAGTAACAGAGGAACGTGTTAGGGCTAAGGTTAAAGCATTTCCCCAGCtcccacacactgcacacacccTAAGTTAACTCTAGTACtaaaaactcacacacacacgcttccGTTCTGATCtctactcactcacacacacaaccacccACCCACGGCTTAaaatctgtgtattttattttagtctctttaaatgtattcagagcAAATTCACACTATCATTTACACTAAGAGGAGGGCTATATTTTGTCTTAGTCGAGCTGAATGTCTCATTTGGCCTTGTATGACGCAAAGGTTATCCCACAGTGAGGGGCTTCTTCCCGATTCTATTTTAATTGGCATGTCTCTCTCACCCATTTGGCTTGACACCAATTCATCAATTATCTGGTAATTAGGAGGAAGTTTGGTCTTAACAAGCGACGAGATGTATAAGTAATGACAAGGAccataaattacacaaattgtAGGGCCTACAaacacgccccccccccccacacacctcaCCCTGTTGTCCCCTCCTTCACATAGTCCtgtggtgttcattaataagaTTCCCTTCCAGGTGTTTAAGAGTTATTATATCTGGGAAATGATTTAGTGTGACACTGATCAGCAGCCAGTCTGGTGCCACACTGAAATGCTTACCCCCTCCCCCTGACTGAAACCATCCTAATGCAAAAGCTGCTCTAAACACATCATAAAATGACTTCCTATTTTCGACACCATTCAATCTGATTCATAGTGACATCGCTTCTTGCCACAATCAATACAGTTAACACGTGTCCGGCCTGAATACTAGTTTAGATTTCCCGAGTCCGACTTGATGCTCATGCATATTCATTCAGGTGTGGCTTTGTATTTGAACAGGTGATTGGTTTAGGTACTATTCAGAGCGAATTGTTCTCCAGGTCAATTCTAGACTCCTCTGTGGCAAATGTATTCACTATATGTACATgtaaacatatgtatatgtgcattATATTAAGATAAAATCTAAACAGACCCATATATTaactaaaatgtatgttttagtagtatatatttattagtattatatgcatataaatcaacaaaacataTCATGAACTTGCAAATTTAACTGAAAACCATTCCAATTTCTGATGGGAAAATATAATGTCCCTGTGTCAATCAGATTGTTGAAATATGAAGTTATTTTATGGTGAGTGTTCATATGGAGTTGAGCAGCAGCGGTTGTATTCTGTTGACAGAGAAAAACACGTCTGCAGGACTATATATATCCCACAATTCCCTGCACAAGCCAGGACAGAACTACCTAAAATTAAGTTCACCATCACGTTCATAAAGTGTCTCTGCCTGAAGCTAGTCTGGTGTCACACTGAAATCCTTCCCCCCTTTCTATTCACCACCTGATGTGGAATTTAAGTCCAAACCAGTCAGTTGCTGGGTGACTGGGGGTTTGGCAGGGACTGTTGGTTGATTCGCCATTATGACACCAAACGAAGAGTGCAATTAGGGTTGCGTACAGATGCTGAGGGGCTCCCAGGCTACAAACTGAGCTGCTCTTTCCCCTGTGATGGGGCTTTAACAAACACACCAGTGGAGCAAGCTACAGCTCGAAAAgaactaaatacatttaattaagaatcaaaaaacaaacgacaacaaaaaaaaacataaaaatcaaaaaACTGCAAcgagaagaaaacacaaaaaaaaaaatccacacagATTACAACAGGCACCCGTCAAAGACTACACCACTGTGTCCCATTAAACCCTATCATCTCCTTCCTCTCTCCGCTGTCCCGCTGTGTTAATATAAGGTTTCTCTCCTCCGTCACTGAGTGTCCAACTGCGTGCGTTTTTAAAAAATCAGGTTTTCTGGTTCAGATCTAAGGGATCATGATCCACTGACTGACTGGGAGGGAGAGGTGAGGTGGGGGGGTCATTTCGGTGTGGCACAAAATGGGGTTCAGAGCATGGTGGGTGACGTAGGGATGTGCTGCCCTGCCCTGAATGAACAGCCGAGTGAAGAGTTCAGCGTTGGAAGGGAACAAAAATCAGACTCTGCCCAGTTAGAAAAGGTAGAGTCTTCAGGGGGAGAGGGTGTCTTTGGGGGTTGTgtccagaaagagagagaaggaaggaaggagggagggagagagagagagagaaagagagagaagttgTTGCAGCACAGAACGCACTGACTTTTCTTTCGGATGGGGAAAAAATTGGATAAGAAACTACAATGCGTGTCCcatcttgctctctctctgccttcgTTATCTGTGTCAATAACCCTGTACAGCCTGACAGAAGTAAAAAGACCACTGGAGGATACAGGGAAATGGGGCTCTACTCACTAGTGGAGTCCTAACCCAGTCCTGGCACAGTAGCATTtaaagagatttttattttcctttttaaaaggaTATGCCACAATAGAGGCCGGGTCTCCCCTAACTAGGGTGCCAGCGCATCGAGGGCACCACGCAGGAGACGGACACCCTGATGCTGTGCCAGGGGGCTGGGAGGGGATGGCACCACAATAAAAAGGGAAGTCTGTGTACTGTTGCCCTTCAGTGTgtgtcttcctctctcccagtgtTGACTGTGTGAACTGTTTTAGTGAAgcaaattcttaataaaacgtTCAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169884 lncRNA upstream 1405 13530772 ~ 13531293 (+) False G135250
TU169885 lncRNA upstream 1405 13530772 ~ 13531293 (+) True G135250
TU169849 lncRNA upstream 48220 13477562 ~ 13484478 (+) True G135226
TU169675 lncRNA upstream 104699 13427351 ~ 13427999 (+) True G135138
TU169673 lncRNA upstream 111647 13417405 ~ 13421051 (+) True G135137
TU169924 lncRNA downstream 78104 13665634 ~ 13665881 (+) True G135280
TU169926 lncRNA downstream 84584 13672114 ~ 13673799 (+) True G135282
TU170036 lncRNA downstream 314777 13902307 ~ 13904536 (+) True G135358
TU170037 lncRNA downstream 317186 13904716 ~ 13905291 (+) True G135359
TU170033 lncRNA downstream 317945 13905475 ~ 13906347 (+) True G135355
AMCG00012227 mRNA upstream 4728 13525684 ~ 13527970 (+) True AMCG00012227
AMCG00012228 mRNA upstream 23899 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012224 mRNA upstream 209309 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012223 mRNA upstream 225175 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012217 mRNA upstream 255731 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012242 mRNA downstream 108560 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012241 mRNA downstream 153709 13741239 ~ 13743991 (+) True AMCG00012241
AMCG00012243 mRNA downstream 199850 13787380 ~ 13788233 (+) True AMCG00012243
AMCG00012245 mRNA downstream 226018 13813548 ~ 13817545 (+) True AMCG00012245
AMCG00012249 mRNA downstream 244051 13831581 ~ 13836820 (+) True AMCG00012249
TU169873 other upstream 12204 13519421 ~ 13520494 (+) True G135240
TU169846 other upstream 23899 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other upstream 23899 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other upstream 23899 13506190 ~ 13508799 (+) True AMCG00012228
TU169557 other upstream 107339 13422435 ~ 13425359 (+) True G135058
TU169982 other downstream 219683 13807213 ~ 13813756 (+) False AMCG00012245
TU170021 other downstream 262848 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 474707 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 659233 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 788103 14375633 ~ 14377651 (+) True G135541

Expression Profile