RNA id: TU169974


Basic Information

Item Value
RNA id TU169974
length 767
RNA type TUCP
GC content 0.46
exon number 1
gene id G135318
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13704846 ~ 13705612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtattttaacagtgagagacagaataacaaaaaaaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaattacagaggtcagatgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgggGCTGAAGGTttgcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagtcactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacaacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcatccctttgatgcggtgcggtgtccccttagcagaaaaacccccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggtgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatcaatcattggcaaacttcagacgggcctgtacatgtgctttcttgaacAGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169954 lncRNA downstream 68860 13610486 ~ 13635986 (-) False AMCG00012238
TU169686 lncRNA downstream 278848 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA downstream 278848 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA downstream 278848 13422435 ~ 13425998 (-) False G135146
TU169837 lncRNA downstream 286042 13417405 ~ 13418804 (-) True G135217
TU169996 lncRNA upstream 46298 13751910 ~ 13818084 (-) True G135333
TU170104 lncRNA upstream 148946 13854558 ~ 13856288 (-) True G135405
TU170116 lncRNA upstream 178190 13883802 ~ 13884899 (-) True G135416
TU170117 lncRNA upstream 179317 13884929 ~ 13886535 (-) True G135417
TU170122 lncRNA upstream 200190 13905802 ~ 13908557 (-) True G135420
AMCG00012240 mRNA downstream 25525 13673706 ~ 13679321 (-) True AMCG00012240
AMCG00012238 mRNA downstream 37239 13610526 ~ 13667607 (-) True AMCG00012238
AMCG00012239 mRNA downstream 106609 13580652 ~ 13598237 (-) True AMCG00012239
AMCG00012231 mRNA downstream 136071 13562311 ~ 13568775 (-) True AMCG00012231
AMCG00012237 mRNA downstream 152392 13547084 ~ 13552454 (-) True AMCG00012237
AMCG00012250 mRNA upstream 181126 13886738 ~ 13898497 (-) True AMCG00012250
AMCG00012256 mRNA upstream 284266 13989878 ~ 13996084 (-) True AMCG00012256
AMCG00012257 mRNA upstream 339017 14044629 ~ 14045114 (-) True AMCG00012257
AMCG00012258 mRNA upstream 370536 14076148 ~ 14082227 (-) True AMCG00012258
AMCG00012261 mRNA upstream 384456 14090068 ~ 14094624 (-) False AMCG00012261
TU169886 other downstream 180165 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 182918 13520856 ~ 13521928 (-) False AMCG00012233
TU169801 other downstream 405410 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 472502 13231672 ~ 13232344 (-) False AMCG00012222
TU169764 other downstream 620685 13082221 ~ 13084161 (-) False G135172
TU170164 other upstream 387630 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 814218 14519830 ~ 14523063 (-) True G135814
TU170641 other upstream 825861 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 893610 14599222 ~ 14602802 (-) False AMCG00012292
TU170709 other upstream 1011860 14717472 ~ 14721170 (-) True G135856

Expression Profile