RNA id: TU170034


Basic Information

Item Value
RNA id TU170034
length 2440
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G135356
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13946316 ~ 13948827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTTACAATGATACAGAAACCATGAGCTATAGCACGTGGAATTTTATTGATTAAACCAATAACTTATAATGGTGGGTTCCATCTATATTATAGTCCACATGGTACTGTAGTAATGCATCAGAATTTGCTAAGCAAGTActttgtacactaaagtaaagcAAGGCACTGTGTTCACTTAGAGTTTACTGAGGTGGGTACTGTGTTACTGTAGTAGAGATGGGCACTCTAGTAATGCACCAAAAGCCTTACTGAGTTGGGCATTGTGTGGACTGTAGTTAGAGTTGGCAAAATTCATTTTACTAGCTTGTGTAGTCCAATAAATATGGTACTGTAGTAATGTACCATATAAATGTACCACAGATACCACAGCATGTGTAATGATATAGCATacaaaatactataataaaCTATTGAACATTTATTAAGAAGCTTCTAGTGTTCAAATGCATTCCAGTAGTGACAAATCTTTATTTGAATCCATTGTCTATTCTGACTGCAGGACAAAGGCATGCAACCTCAGTCATACTTACCAATTGTGAACACAGttagtttggttgtttttaatgtaccaGAATATAGAGAGTACATAGGCATTCTACTTCTAATGCACTCCATGGGTCCATGACAATCAGTACAATAACACACAGAAGACCATAGTAGTGCTGTTTGACACTTTGTGTTAagtattgttaattttatttgataGGATTGTTTACTCCGACctatttttcctgttatttccctgtttatttgtgtgtagctCCTTGATAGTATGTGCCACATGTATTTATCTTATATAAAATGATGTTTTCTCTAAATGTGCACTTTGAACTTGGGATTGTGCATCAGGCTGCTACTGTCATTGGGGCccacacagaaaatatattgtattattttcaattggGAAAAGAAGCAGCCCACGACTCGCTTTTCTCATAggtttattgaaataaatgcgCCTCGTGTGCCAACTCTAAACTAGAACCCCATCATCAGCTTCAGTTAACCCCTACCCCTACCTAGTGCACTGGTGCACTTTGAGGCTTTTTCTCAcagagaaactcttcccacactgggcacaggaGTACGGTCTCTCTCCAGTGTGAGTGCGGTGGTGTCTAACAAGATCAGCTGACCCAGcaaagctcttcccacactgggtgcagggGTACGGTCTCTCTCCAGTGTGAATCTGCTGGTGTCTAATATACTGTGTTAACCCAGTGAATCTCTTCCCACACAGGGTGCAGCAatacggtctctctcctgtgtgaaccCGCTGGTGGACTTTGAGATTTTCTGTCCGAGTGaatctcttcccacactgggtgcaggggtacggtctctctcctgtgtgaatccGCTGGTGGAGTTTAAGATGTTGTGCCCGAGTGAATGtcttcccacactggacacaaGAGTATGGTCTCTCACCAGTGTGAGTGCGGTGGTGTATAGCAAGATGGCTTGACCCAGTGAATCTCACGCCACACTGGGTACAGCAGTATGGCTTCTTTTTGGTACGAGTGGGTGGATCTCTATTTAAGACTCCAGTATGAGTGTAGCTCTTTCCACACTGAGGCTGGCTAAGGTGATGCCGTTTTCCACACTGCTGTAGGGCAAGTGAGGagggggagctggaggagatATGAGGTCTAGGGTTTCTGGGACGTAGCTGTCTGTGCTGTGGTGATGGGCTCTCCCCTCTCACTGGAGATTCTAGGTCACACTGTCCACCCACAGGGAGCTCAGGCCCCACGTCACACTGTCCACCCACAGGGAGCTCAGGCCCCACGTCACACTGTCCACCCACAGAGAGCTCAGGCCCCACATCACACTGTCCACCCACAGAGAGCTCAGGCCCCACGTCACACTGTTCATCCACAGGGAGCTCAGGCCCCACGTCACACTGTCCACCCACAGGGAGCTCAGGCCCAGGGTTATAGGTGCTGTCTGTAATATTGTCAGTTTTGAGATTACTTAGTGTGTCACTGAAAGAAATCAGTATTCTTGTTTTCACTGTGTAAACAGACTGCTTCGCATTGTCCTCCGTTTTGATATGATCAGCCAATGTACTGAGTCCACACTCAGATCCCAGAGACTGTATCTTGGAAAGATCTGCAGTGTGGATGGAGTCCAGCTCAGGGTCACTCTTTATGAACTTTGACTCTGCGGTGTCAGACCCCAGTGCCTCGAGTCCCTGTGTTGACCCCTCAGTGTGTGGCTCTGCCATGTGTCCAGACTCCAGTCCCCtgagctcctcctcactctgtctgctcctgtgctgctcagTCAGACCCTGGTTGTCTTCAGTAtctgtgggctctgtgtcctgcctcagactggagctccactcctgctcccagtgctgctgctcaatgggagccctttccccagagtcagggagagcgctggcctctacagctcctgaAGAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170033 lncRNA upstream 39969 13905475 ~ 13906347 (+) True G135355
TU170037 lncRNA upstream 41025 13904716 ~ 13905291 (+) True G135359
TU170036 lncRNA upstream 41780 13902307 ~ 13904536 (+) True G135358
TU169926 lncRNA upstream 272517 13672114 ~ 13673799 (+) True G135282
TU169924 lncRNA upstream 280435 13665634 ~ 13665881 (+) True G135280
TU170089 lncRNA downstream 225120 14173947 ~ 14176807 (+) False AMCG00012262
TU170228 lncRNA downstream 278163 14226990 ~ 14232263 (+) True G135506
TU170265 lncRNA downstream 419222 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 424213 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 428845 14377672 ~ 14378695 (+) True G135544
AMCG00012246 mRNA upstream 61186 13882244 ~ 13885130 (+) True AMCG00012246
AMCG00012244 mRNA upstream 69174 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012247 mRNA upstream 91261 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012248 mRNA upstream 104323 13838455 ~ 13841993 (+) True AMCG00012248
AMCG00012249 mRNA upstream 109496 13831581 ~ 13836820 (+) True AMCG00012249
AMCG00012255 mRNA downstream 19704 13968531 ~ 13977224 (+) True AMCG00012255
AMCG00012254 mRNA downstream 30643 13979470 ~ 13982769 (+) True AMCG00012254
AMCG00012252 mRNA downstream 35637 13984464 ~ 13989166 (+) True AMCG00012252
AMCG00012251 mRNA downstream 100125 14048952 ~ 14057554 (+) True AMCG00012251
AMCG00012253 mRNA downstream 113619 14062446 ~ 14069189 (+) False AMCG00012253
TU170021 other upstream 91397 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 132560 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 360400 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 425822 13519421 ~ 13520494 (+) True G135240
TU169844 other upstream 437517 13506190 ~ 13508799 (+) True AMCG00012228
TU170041 other downstream 113410 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 297936 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 426806 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 428845 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 439248 14388075 ~ 14389685 (+) False AMCG00012267

Expression Profile