RNA id: TU170249


Basic Information

Item Value
RNA id TU170249
length 1990
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G135525
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14297735 ~ 14302369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattttcttagcagaagccctcctcaagggtgacttacaaaatataagaccATTGCAAAGCTGCAATAATATagtacagatcaaaacataagaaaattacaaattacacaagtgGATAGGAAAGTagacagttaatacaaaattcaagtcctacatcctagagtGTAATAGCtggtgcagacaagatgtgctGTCATACACTCAGgggaagggggcataggggagatctaataaacaacatgagtactagcaatgtaaaagcaagcagTATGATGATACGTTATATAATTGCAATTTAAtaggagagctgagccacacagaggaataaacaactaaattaggaaggagagtggagaggaggcagagttagtcttctggcactggaggagcgcagtggtctggagggcatgtatggagagatgagtgacTGAAAGTAGCttagtgcagtgtggtcgagacagcggtaggtgagggtcagtgtgttgaactgaatgtgtgccggtatcgggagccagtggagggagcggagcagtggagtagcgtgtgcgaatcggggcagagagaataccagacgagccgcagagttctggatgagctggagcggcgggtagtggatgcaggcaggccggccaggagggaattgcagtagtccaggcgggagaggactaGGGACTGGAAGAGCAGCTGAGTTGCCTGGACCGTACTTTTATTCTGGAATGTTTACCTCAGGGCCGGGACTGACATATTCAGGAGCTGCCTTTTCATAGCATTGCCTActgttttattcaaatttaaatatttagaacaCCAGCAAAACTGTTATTTTGTGTACAGATAGACTTACATCCATCACATTAACTGAAAGGAAAGGCCAGGTTAACTTTAACCCTGGATTTGTTTGACGTAGGGAGCAGAAACAGTGAGACACATTTTCTCTGAGTGCCAAATGccatttagtttgtttgtgatGGAagtcaaagaagaaaaataaatgttgaagcGCAACTACTTCCACTGAAGATACAGAAGAAAACTGCGTTTTTTCCTAGCATCACCCGATAATCTGACACCTGCCTATCAAACGATCTCTCAAGATGCATGTTTGTCCAACACCTCACTTCTCTGCATGCTGCTGGTTTAATCTCAACTTCCTCTTTTCCCCTGTTTACTAGTCTGCATGCCCTGAACTGGGCAGCTTCATGTTGTGGAAACTCTAGTCTGTCTGGACCGTACTTTTATTCAGCGATATATCTGCTGCCATCCAGGAGGGGAAGAATAAACAGGAAGGACACTGACAGCTCGGTGCACCTGTTTTGACTAAACAACACCCCACCCTTCCCTCACAGCCACATCACCTGTTAGCACTCAGCATGATAAAAGCTGCCCTGaccagaggaagagagagcagTGGAGAGGCAGCTTTGATCACCAGcggcagcagcaacaacaatgaCCGCAGGGCTACAGCaaagagacacaaatggaattaTCACTGATAAAAGACAATTGAACTAGCAGTGTACCTGGAATGCACTAGTGGACTTCCCTTGCAGGATTGGTGATTTCAAGTCCCATGGCGGTAGACAGCACCTCGGGCTCCGGATTAAgcagcacagagggagagaagcgCAGtagagggtgagagagggatgCATCCAATACCATCCGTGGTTGTGTGTGATTGCAGCACTACCTGTGAGCATgttccttccttccctctccctctttgttTGGTCGGAGCTGGCTGCGTGGAAGAGCAGGTCTGCATGGGCAGGAGTGCCGTCAGGAGGGATCTTCATCCCCCAGCCCGGGACGGGAGCCCCGTTCTGGGCCGATTCAGGACCTTCCGTATGTCCAAGTGAACTGCGTGTTGGGACTATCTATTCTTTTATGTCTTGttgcttatatatttttgtgccacTGCTGTGTATGGCTTTATGATTTTAGCATAGTTATTTTTGTAGTCTTTAGCTTTGTACTGGTTTTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170197 lncRNA downstream 95849 14200261 ~ 14201886 (-) True G135481
TU170202 lncRNA downstream 104363 14176897 ~ 14193372 (-) True G135483
TU170175 lncRNA downstream 183532 14113040 ~ 14114203 (-) True G135467
TU170132 lncRNA downstream 223648 14070491 ~ 14074087 (-) True G135430
TU170145 lncRNA downstream 246870 14049530 ~ 14050865 (-) True G135443
TU170283 lncRNA upstream 67726 14368035 ~ 14368397 (-) True G135551
TU170620 lncRNA upstream 134666 14434975 ~ 14435728 (-) True G135799
TU170623 lncRNA upstream 140456 14440765 ~ 14442102 (-) True G135802
TU170678 lncRNA upstream 308501 14608810 ~ 14650327 (-) False AMCG00012291
TU170700 lncRNA upstream 372702 14673011 ~ 14691919 (-) True G135851
AMCG00012272 mRNA downstream 4197 14280936 ~ 14293538 (-) True AMCG00012272
AMCG00012264 mRNA downstream 66366 14224711 ~ 14231369 (-) True AMCG00012264
AMCG00012265 mRNA downstream 73654 14217340 ~ 14224081 (-) True AMCG00012265
AMCG00012259 mRNA downstream 127453 14166467 ~ 14170282 (-) True AMCG00012259
AMCG00012261 mRNA downstream 203111 14090068 ~ 14094624 (-) False AMCG00012261
AMCG00012271 mRNA upstream 27809 14328118 ~ 14332821 (-) True AMCG00012271
AMCG00012270 mRNA upstream 71645 14371954 ~ 14377641 (-) True AMCG00012270
AMCG00012269 mRNA upstream 77509 14377818 ~ 14386628 (-) True AMCG00012269
AMCG00012283 mRNA upstream 222796 14523105 ~ 14523458 (-) True AMCG00012283
AMCG00012282 mRNA upstream 223512 14523821 ~ 14527422 (-) True AMCG00012282
TU170164 other downstream 203047 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 592123 13704846 ~ 13705612 (-) True G135318
TU169886 other downstream 773054 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 775807 13520856 ~ 13521928 (-) False AMCG00012233
TU169801 other downstream 998299 13298444 ~ 13299436 (-) False AMCG00012226
TU170639 other upstream 219521 14519830 ~ 14523063 (-) True G135814
TU170641 other upstream 231164 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 298913 14599222 ~ 14602802 (-) False AMCG00012292
TU170709 other upstream 417163 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 425201 14725510 ~ 14794158 (-) True G135857

Expression Profile