RNA id: TU170265


Basic Information

Item Value
RNA id TU170265
length 289
lncRNA type intronic
GC content 0.48
exon number 1
gene id G135540
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14368049 ~ 14368337 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttgtcttcaagtaactacggtggaaaccctgcttacaaagaagattttgtgcacaaccttggagccttcaaaccagtggaaaatctgtttggaaaagactctacattcgcgaaaccccaacttccaggtgcatcgactgagtggaagttcttggacaaagccgaaccggactgcctttgttccaaaccacacggacctcgtgccgtgtgctgttatctgagcccgaaggcagagaggcctctctgcgacgaagttcagataagtttaacagtttggagtttgtgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170228 lncRNA upstream 135786 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 191242 14173947 ~ 14176807 (+) False AMCG00012262
TU170057 lncRNA upstream 411744 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 419222 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 461702 13905475 ~ 13906347 (+) True G135355
TU170270 lncRNA downstream 4703 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 9335 14377672 ~ 14378695 (+) True G135544
TU170321 lncRNA downstream 149879 14518216 ~ 14521605 (+) True G135575
TU170332 lncRNA downstream 167187 14535524 ~ 14538864 (+) True G135582
TU170347 lncRNA downstream 195239 14563576 ~ 14576998 (+) True G135594
AMCG00012273 mRNA upstream 53613 14312287 ~ 14314436 (+) True AMCG00012273
AMCG00012268 mRNA upstream 71390 14293311 ~ 14296659 (+) False AMCG00012268
AMCG00012263 mRNA upstream 168054 14186727 ~ 14199995 (+) True AMCG00012263
AMCG00012262 mRNA upstream 184882 14173913 ~ 14183167 (+) True AMCG00012262
AMCG00012260 mRNA upstream 250080 14100100 ~ 14117969 (+) True AMCG00012260
AMCG00012267 mRNA downstream 19701 14388038 ~ 14389607 (+) True AMCG00012267
AMCG00012276 mRNA downstream 30776 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012274 mRNA downstream 47670 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012277 mRNA downstream 59622 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012278 mRNA downstream 70371 14438708 ~ 14443094 (+) True AMCG00012278
TU170232 other upstream 72634 14246763 ~ 14295415 (+) True AMCG00012268
TU170041 other upstream 272252 14062237 ~ 14095797 (+) True AMCG00012253
TU170021 other upstream 513130 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 554293 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 782133 13584270 ~ 13585916 (+) True G135264
TU170267 other downstream 7296 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 9335 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 19738 14388075 ~ 14389685 (+) False AMCG00012267
TU170305 other downstream 66628 14434965 ~ 14435728 (+) True G135566
TU170313 other downstream 215787 14584124 ~ 14585770 (+) True G135573

Expression Profile