RNA id: TU170321


Basic Information

Item Value
RNA id TU170321
length 2124
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G135575
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14518216 ~ 14521605 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGTTGGGACGCGGCATGATCACCAATCACtgtagatttaattttattgttggTCATCCTCCCACCTCCAACTtctcccccatccctctctGTGAACAGAACTACTGGCagcacagaacaaaaacacacaaaacacacagcggCACGAGGCAGAGAGGAGACCCCAACTCGGTTCAACATATGAAGCTCCACCCTGCAGTCCCCCCTTGAGGCCTTGAggtgttattaaaatgttattactgCGCTATCTCTGCATTGTTCCCCAGGTATCCCTGTGGTTTGCACTTGTTATTCATGAGTtattaatgtgtaatttgtgtgtttttgctgttaCTTGTGCATCGCTACAGAATTCACATctgttgtataaataaatgcatacaaactcACAGCTCACACCTGTGCAATGACTCAGTGAAAAATACTGCACACACAGTCTCCAGCAAGGACCACAattccacaaaataaaacattcaattctctgaACCATAAAAACATCCTCCCTAGTACTGAGGCGATGTGGGGCTGCTGGCTCCACTGTCAGTGAGAGTATCACTGTATCAGCCCCCGcccaccaccccccacacacaacatCTTATACAAACTCACACCAAACAGTCGGACAAAATTAAACATCCTTGCCTTTAGTCGTATATGTCTGTATTTACAGGTATTTATAGGTTTCACCAGCACTGACAAAGAGAAACGGACACAGTGGTCGCAGGCTTCTGTACTTACAGTGGTTAATACAGAgagcacagcactgacacacacagggagagaggcgctctgacacgcacacacacacacagggagagaggcactctgacacacacacacacacacagggagagaggcgctctgacacacacacacatacaCACAGGGAGAGAGGcgctctgacacacacacacatacatacacagagagagagggctctgaaacacacacacggagagagagaggactctgacatacacacagacacacaagcacaaaCGGAGAGAGGGGCTCTGTTGACACACACGGAGGGggcattgacacacacacacatacacagagagagaggggtgggggagtgGAGAACAGACCTAAgttggacacacagacagactgaacAGCACACAAAAGGACACAGGCACTCAGtcagacacagagaggcagagagacacactcactcacacagacagacagacaatcagtcagacacacagacagaaaaccAGGTCAAGCAATATAGATATTTTACAggaatttacataattttacaGCTCCTTGCAATtttcacaaaattacaaaataataataacaataataataataataataataataatacatttatcatTTACAGACCATTGGTTTTAATGTTAGGTTCGTCATTAATTCCTTGTCTTGGGATCAGCAATTGATATGGAAGCAGACTTGCTAACGAAACACAAACTAATGATCTAACTAATTAATCAACTAACTACCCACTTTGCCCCTGCCCCTCCTCTCCAATCTCCcattctctccttctttctgtTGTCTCTCATTCCTCTCTCACTCGCTCCATCCCAACACACTGCTCCACCCTCTCCCATGCAATCTTCCCTACACTCCTCCTGACCattctccctccttctctccatccctctcccaTTTTCCCTCCagcctctctcctccctctctttcacgGGCCTTGGAACACCACTTTCTATGCCCTGATCCCTTACTCAACAATCTTATCCACTTCTCCTGCACAGTTCTCTCTGCTTGCCCATTGTCTCTGTCCAccttttcttccctctctccgcCTCTCCGTCCTTCgtttctcccctctcctcttgCACTACAGCATCCTGTTGCTGTGGAGACATGTCCTGAGTGGCGCTGGCCCCTGGCCAATCTGGAGCCAGACGGCACCTCACTGCTGTACCCACACAGCGAGAGGCCGGGGCTTAGagtgtctctctcgctctctctcttgctcgtTCTGCCGGGAGGAAGCAGGCAGGGGAGGTGGAGACTGAGTTTCCACGGCGACCAGCCCGCTCTGTGCCCGGCCCCTTGACGGCCTGCTGCCGCGATCTGATTGGACAACAGCAACTGGCTGGAGGCAAACAGGAAGAGACAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170275 lncRNA upstream 139521 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 144271 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 149879 14368049 ~ 14368337 (+) True G135540
TU170228 lncRNA upstream 285953 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 341409 14173947 ~ 14176807 (+) False AMCG00012262
TU170332 lncRNA downstream 13919 14535524 ~ 14538864 (+) True G135582
TU170347 lncRNA downstream 41971 14563576 ~ 14576998 (+) True G135594
TU170353 lncRNA downstream 48770 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA downstream 75525 14597130 ~ 14601583 (+) True G135606
TU170391 lncRNA downstream 142147 14663752 ~ 14707073 (+) True G135625
AMCG00012275 mRNA upstream 65987 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012278 mRNA upstream 75122 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012277 mRNA upstream 83330 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012274 mRNA upstream 94576 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012276 mRNA upstream 107776 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012279 mRNA downstream 45762 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012284 mRNA downstream 102914 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012285 mRNA downstream 116365 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012293 mRNA downstream 131834 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012294 mRNA downstream 190571 14712176 ~ 14726783 (+) False AMCG00012294
TU170305 other upstream 82488 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 128531 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 139521 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 140565 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 222801 14246763 ~ 14295415 (+) True AMCG00012268
TU170313 other downstream 62519 14584124 ~ 14585770 (+) True G135573
TU170413 other downstream 188639 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 466693 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 598120 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 930464 15452069 ~ 15479549 (+) True AMCG00012302

Expression Profile