RNA id: TU170353


Basic Information

Item Value
RNA id TU170353
length 4829
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G135595
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14570375 ~ 14610737 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCAGTGTCTATTCGTTCATCAGGTAAATTATTCGGCGAGTCGCTCGCTTTCATACGAAAAAATTCAAGTATCGGTCGGGAAACAAACAAAgcgaaaaacaaaaactgaacacaGCAACAGAAGAGCCAAAAAGGTGAAAGTAAAAGCGGTTGACACTGAGAAACCAGGACCAAGTCAATGAGGCCAAACACTCCCTCAGACAGCACACACATCCACCActcactccctcacacacacacacactcactcactcggACACCATACACACACGGCTAATTGGTCACCATTATCCAAACCACACTCTCCCCCCTCCCATCTCACATTTTTCTCACAAAGATATAAAACGCCCCTACAGAAAATCATAACACATGATCTCTCCCAATTTCTACCCCACCCGCccccagcaaaaaaaaacaagtggtATCTCCCATTGTTCACTACATCTGCTCTACACACATGACCTACAGAGACAACCCAGCAGCGACAGCCAAACACAGAGCTGCATTAGGGGCCTGGAGGCCCGCCCCACGGCCATTCAGGGGCCAATAGCTTGAGGGGAAGACCGCCCCTTGTCCCGAATGGGCCCCCgatcacagacagacacaaaccaGCAGCTTGGACAGCGTGAGTTTCTTTCTTCCCCAATCACAGAAACCATTTCAGTTCCTCCAAAAAGTAACACAAATCAGTGCAAGCCTGTGCATGGGACATGGAGTGCTCAGCGCCAAGTGTACGATTCATCCTCCCCTCTGTGGGACAGGACACGTCCCAAGCAGACAAAGAGGAGGAATGATCTAGAGTGGATAAGTACAGCTGGTACTGAAATGGTTtgaagcagaaaagaaaaactcacCCTTCACAGGATTATCTCAAGCGGCCGATTTTAAAGATTCGCTCCCGTTCTGCATATACAGGATTCCGCAGCCCTAACTTCCCAGGCCGACTCGCAAGGCGCCCCAGTGACATCAACCAGAACAGCACAGGTTCAGAATAAACCCTGGTCACTGCCTTTGTATTTGCTAGGCTGAAATAAAGTGCGCGAGTTTTTGCGAGTGAGTATAAACGTGCGAGTGCGCAtctgtgagtttgtgtgagAGAACGTATGCGAGTGTGAAGCATTCTCTCTCATATTGGACCAGGGTGTCCTCTAATGAGAGAAACCCCAAACACAGCTGAAGAATTGGATCTAAAACCGTCGATTAAACGCTCCAGCCCTTAACTGCGCCCACGCCGGCGCCACAGTGATGTCATCCACCAGCGCCAGCCAGGCAGCCGGGGAGTCTGGGAGATGTTGCCTGCGTGGGGCGAACGGGACGGACAGATCGGAGTGCGGAGGGGGATCCCCTTGggctcacagagagagagaggagctgcCCTCAAATGTCCAACAGCGCagttttcatattcatattagaCAACGCAATCACAAGTCAGCCTGGGCAGTTTTGTCCGCTGGGAGATGCTGGATTTTGCAGTGGCCTTGAAACAGAGAGCTGTGAAAGGGGGTCTGTAGTCAAATCAAACAAAGGCCTAAAATGATCGCGTATCCCGCAGAATTCTCCGCAACTAAAGTGAGGGGCGATCGGTCTCCAGCACAGACACCCCCTCGGATGCATCTAGGCAGTTTGTCCTCGTCAGACTCCATCATTATTTGCGTGGAAAGAGGCGGAATTCAGCCAGGCAAACATACTGAAGAGAAAGCTGCGTTTACACAGGATTCCCCTACACTCTTTCAGCACGGCCAGCGAGGTGGGCATCAGGGTCCCTGGGCAATGAGGCCTGGTGTGACAGAAGGACTTCAGAGCCTTCACAACGCCCAGGGAGCAGAGACACTCCCACATCAGGACTGCAGGGGACACAGACAGAATATATGGGCCTATTTTAGGCCTTTATTTTGACTACAGTTGTGATGCACCCTGGGGAGCTGGCGAAACCGGGCGCGTTTATAACATCCTGTCAAGAGTCTGCAGCAAGACAAATACAGCCCAGGGCAAAGCAGCTGGGCGGGTGGGAGACAGGGGAGCTGCTGTGACTGACCCCTGAGCTGCCCAGGGGGGACTGCAGCTggtctcccctcccctcctccgcCACCCTCTGTAAATAATATACCTGAAGTTACACAAATCCACATTCTACCGCACTATATTAGAATATCCGTTTCACCAGGGATTCAGCATGATTATTTTActtgtgtggactatagtatagtataggggccagactggagccagcactgtctaagactatagtatagtataggggcccagactgtgTCGTTTACTACAGGGATCCAGACTGTCCTTCATCTCAGAGCTCAGTTGGttggggggggatgggggtgggaCAAGGGCATCTGTGTAGCACCTACTGGTTCGCAGAGGAGGACTGCGGACACAAAGCCTTACTACAGTTATTAACATCACTACTACTGAGAACAGCTTAAAAACATCAGAACAAAACTTGGAAACCTGAGAAGAGTaatgggagagggaggggtgggCTGGTGATAAGGGGGAGGGACCAGGGTGGGCAGTCCAGTCCAATGGGGAGACAGCACTTGACCATGGGGTGTGGTTTAATGGGGTGTGGTTAAATAGTGCAGTTCTCTAGGGGTGTAGTTTGTGGACTGTTGACCTATAGGGAGAGGGGGTGTGGTCTGGGAGGGCTGTGGTCCTATAGGGAGACCGGGATTGGACAGTGGGGCCTCCATTCCCGCCCCCTGCCCCAGTCTACAGTGCTTTATTAGACAAGTTACCTCGTTAGCGAGTCAGGCGAAATAATTAAGCAACCACTATGTACCGGGGCCCTAAATATCGAACAACAGCAACGGCAACAACCACAAATAAATCATCagcatcatcgtcatcatcatcatcatcatcatcatcacaaaataaaacctacaaCAAAACAGTAAGAAAACGACCAGGCTTCGGACACCGAGCGGCAGCATCCTGGGTTTGTTCTTAAtcttcttgtttcttttcccGTATCTTTTACCTTCCTTCCGTCCGTCCGTCCTTCTTTTAATCGTTTCTCAAGTTTATCAGCAGCATAAGCGAGTCTAGATTCCCTCtttccccttcctcctcctcctctcctctcctctctccagaGGTTTTGCGTCGTTCACTCGGCACAGGTTTCAGTGTCTGAATGTTaagttttccttctcttcccaTCCATagtccacctctctctctctctctctctctctctctctctctctctctctctcactcacagtGTGCTGTCCCCAATTGTGAGTTTATAATGGAGGGATCCCCcattctcactctctctctctcctctccctccctctatctcttctcccccctccctaactctgtccttctctcttttccctccccctctctcctctgcctccgtttctctctccctctctctcttactatcctagtgtgtgtatgtgtgttatcaCTTATCACAACCACACACAGTAAGACAGacgacagagacagagagagagagagagagagagaggggttaatacagtacagaagcactgactgactggacaccgCAGCACACCGAGAGAGGAGATAGCATGGGGCAATAGCACAGCATGACACGAACGACATTGatattaataaagaaactaCAAAAGGCCAGGATACAGTGGGGCCAAGTGGATGGGGCGATGGCGACTACGTTACTTATGGAAACCATCCGGAagggaaacaggaagtgagGGTGTCACATTACAGGGCGGTGTATTTGGCACTGAAGTGATGGCTGATGGGTACAGCAATACTGATAGAAGCCTCGGTAGgcaatcaaaatatttacattcaatGAATTGagtgtctatctgtctgtctcttcctATGGGTCTgactgtctgtctatctgtcgctccctctgcccctctctctgtcccactctctccatccctcccctctGTCTACctctcttccttttcttctctccctctcctcgcTCACcacccctctccttctctctcttccccctctccctgtctctctctctaaggCACCACTATCCTGAAGACGGACATCTGAACACAGCACTATAGtctacacactgactgactgactgatagacacactgacacacccagagacacacagtgacccagacagacacacagacacgggagcgacagagagatagacagacagacagacagacagacagacagagagactcagagagacagtgagacagacacagagtgagagacacgcagacagacacacagaaagaaagacaagcCAAAcagagactgacagacacaggtgtggagagagagaaagagagagagggatgggttAATGGAGCGATGGAGGGTGGAAAGTAGTTGTCAAGAAAGGAGAAAGAAGGcattccctttctctctctctctctctctctctcactctcagctCCTTTCTCTCAGATTGAGACTTCGTACTCCCGTGTGTCCTGGGGAAGACAGATAGAAGACAACCGacaattagagagagagagagaaagagagagacagagagaaaatgagtgagggaggagagagacaaaATGTTGAACAGACAATTACAAAGAGAGAAtgagtgacagagagacagaaaaggaaTAAGGCAATAAGGcaaacagaaagacacacacagacagacggagagactgggagagagacagacagacatacacacacacacacacacacacacacacagacaggcaggcaggcagtctTACCCCAGCCTCGTACAGTGGGTTGTTGAAGTCAGACTCCACTGTGATGGGGCTGTAGGAgtgggtgtgagagagagacaggccgAACAGAGACTTCCACTGCAGCCTGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170332 lncRNA upstream 31511 14535524 ~ 14538864 (+) True G135582
TU170321 lncRNA upstream 48770 14518216 ~ 14521605 (+) True G135575
TU170275 lncRNA upstream 191680 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 196430 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 202038 14368049 ~ 14368337 (+) True G135540
TU170391 lncRNA downstream 53015 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA downstream 65115 14675852 ~ 14677500 (+) True G135634
TU170303 lncRNA downstream 103043 14713780 ~ 14715881 (+) True AMCG00012294
TU170436 lncRNA downstream 193743 14804480 ~ 14804953 (+) True G135656
TU170437 lncRNA downstream 201001 14811738 ~ 14818725 (+) True G135657
AMCG00012279 mRNA upstream 183 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012275 mRNA upstream 118146 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012278 mRNA upstream 127281 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012277 mRNA upstream 135489 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012274 mRNA upstream 146735 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012284 mRNA downstream 13782 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012285 mRNA downstream 27233 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012293 mRNA downstream 42702 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012294 mRNA downstream 101439 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012298 mRNA downstream 303847 14914584 ~ 14915573 (+) True AMCG00012298
TU170305 other upstream 134647 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 180690 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 191680 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 192724 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 274960 14246763 ~ 14295415 (+) True AMCG00012268
TU170413 other downstream 99507 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 377561 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 508988 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 841332 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 949167 15559904 ~ 15563836 (+) True G135744

Expression Profile