RNA id: TU170366


Basic Information

Item Value
RNA id TU170366
length 1522
lncRNA type inter_gene
GC content 0.55
exon number 4
gene id G135606
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14597130 ~ 14601583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGACCCCCAGCTCCTCCAGCGTCCTGCGCAGCACGCCGACCTTGGCCTTGACAGAGTGGCagtcctgcagcagctgcttgtAGTTCTTGCGCACGCCACAGAGGGCGATGTAGCGCTTCAGCCGCTGCACTGACTTGTGCTCCTCCTCTCGGCCCCCGGAGGACGacgtctacacacacacacggcacgGGAGAGGGGTTACGGCAcggacacacactgactgactgcacaGCAACACTACGACATGGGACCCGTTATAACAGCAATGGTACAATGAGCACACTCACTTTCTTCCCCATCTTCCCTTCTTTCTCGGCGCTGCCCTTCTTTTTCGTACCCCCTCGCTGCGGGCCTGCCTTGCTCTCCTCCTCGTCCAGAGAAGGCAGGGAGGAGGAGTCGGAGTCTGATCccttctgtttcttcttctcGTCCTCTTCCACACTTTCCTCCAACTCTGccgggtgagagagagagagagagagagagagagagaaagcagaatGACCagtcagacacagagacaggctCTTATgatgtccagtcagtcagtgtgtctgtactaaCCCCTGTATTAACCCCTGGAAGACACACTCTTTCACTCACCATCTCCATCGCTCTCCTCCTCTTTTCTCCCTCCtttcttcttctctccctctttcattCCATTCTGCCCTCCCTCTTCATCGCTCCCCGAGTCCCTCTGTTCTTCATCTtcttcgctctctctctcgtgcgGTTTCGTTCCCATCTTCCTggctctcctccctccccccttTCCCTTGCTCTCGGTCTCTACATTTCCCTTCGTTGTCTTTTCCATCTGTTTCTCATCACTCTCTTCCTCGCTTTCTGACCCACTCTCTACCGCTACTGCCTTCTGTTTTACTCCCTTTGCCTTCCCTCTGCTATCCTGCTCTTCCTCGCTCTCAGACTCACTCTCTACCTCTATTGCCTTGTGTTTCGCTCCCTTCTTCATCTGAACTCTCTTCCCCTTCTCTTCCTCGCTCTCAGACTCACTCTCTACCTCTATTGCCTTCTGTTTCGCTCCCTTCTTCATCTGTCCTCTCTTCCCCTTCTCTTCCTCGCTCTCNNGCTCACTCTCTACCTCTATTGCCTTGTTTTTTGCTCCCTTCTTCATCTGTCCTCTCTTCCCCTTCTCTTCCTCGCTCTCCGGCTCACTCTCTACCTCTATTGCCTTGTTTTTTGCTCCCTTCTTCATCTGTCCTCTCTTCCCCTTCTCTTCCTCGCTCTCCGGCTCACTCTCTACCTCTATTGGCTTCTGTTGCTTCCCCCTCCCTGCACGCTCAATGCCAGAGTCCGGGGAATCTGGATCAGAGGGAGCCCGTCGAGACTTCTTCCTgcactcctcctctccctcgctctccccTCTCTTGCGCTTGGGGGCGCGGGCGGAGGACGAGACCAGTTTAATGAGCGGCTCGTCGTCATCGCTGCTGTCGCTGCCCtgaaagcgagagagaggcGCAGGGGttgacacagcacagacaccGACTGCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170347 lncRNA upstream 20132 14563576 ~ 14576998 (+) True G135594
TU170332 lncRNA upstream 58266 14535524 ~ 14538864 (+) True G135582
TU170321 lncRNA upstream 75525 14518216 ~ 14521605 (+) True G135575
TU170275 lncRNA upstream 218435 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 223185 14373040 ~ 14373945 (+) True G135542
TU170391 lncRNA downstream 62169 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA downstream 74269 14675852 ~ 14677500 (+) True G135634
TU170303 lncRNA downstream 112197 14713780 ~ 14715881 (+) True AMCG00012294
TU170436 lncRNA downstream 202897 14804480 ~ 14804953 (+) True G135656
TU170437 lncRNA downstream 210155 14811738 ~ 14818725 (+) True G135657
AMCG00012279 mRNA upstream 26938 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012275 mRNA upstream 144901 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012278 mRNA upstream 154036 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012277 mRNA upstream 162244 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012274 mRNA upstream 173490 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012284 mRNA downstream 22936 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012285 mRNA downstream 36387 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012293 mRNA downstream 51856 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012294 mRNA downstream 110593 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012298 mRNA downstream 313001 14914584 ~ 14915573 (+) True AMCG00012298
TU170313 other upstream 11360 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 161402 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 207445 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 218435 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 219479 14375633 ~ 14377651 (+) True G135541
TU170413 other downstream 108661 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 386715 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 518142 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 850486 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 958321 15559904 ~ 15563836 (+) True G135744

Expression Profile