RNA id: TU170391


Basic Information

Item Value
RNA id TU170391
length 269
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G135625
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14663752 ~ 14707073 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagagagagagagagagagagagagagagagagagggaggaagggggggagagagagagggaggaagggagaaagagagaacgAGAGATGCAAAGGAGGAAGAGTTTACAGTTTTAAGGCTTTTTAGTGCATAACAGTGAGAGGCAGCTCCGCAGATCCTCAGGGGACACTGTACAAACGGCGCCCATCTCTCTCCACAACTTCTCCTCCTcgctcctctccccctctctctctccctcctgctctcCGGGACCGGCCctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170353 lncRNA upstream 53015 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA upstream 62169 14597130 ~ 14601583 (+) True G135606
TU170347 lncRNA upstream 86754 14563576 ~ 14576998 (+) True G135594
TU170332 lncRNA upstream 124888 14535524 ~ 14538864 (+) True G135582
TU170321 lncRNA upstream 142147 14518216 ~ 14521605 (+) True G135575
TU170303 lncRNA downstream 6707 14713780 ~ 14715881 (+) True AMCG00012294
TU170436 lncRNA downstream 97407 14804480 ~ 14804953 (+) True G135656
TU170437 lncRNA downstream 104665 14811738 ~ 14818725 (+) True G135657
TU170469 lncRNA downstream 267298 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA downstream 267298 14974371 ~ 14979342 (+) False AMCG00012300
AMCG00012293 mRNA upstream 8637 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 24785 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 35787 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012279 mRNA upstream 93560 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012275 mRNA upstream 211523 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012294 mRNA downstream 5103 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012298 mRNA downstream 207511 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012300 mRNA downstream 256971 14964044 ~ 15134139 (+) False AMCG00012300
AMCG00012305 mRNA downstream 689279 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012303 mRNA downstream 692360 15399433 ~ 15400438 (+) True AMCG00012303
TU170313 other upstream 77982 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 228024 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 274067 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 285057 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 286101 14375633 ~ 14377651 (+) True G135541
TU170413 other downstream 3171 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 281225 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 412652 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 744996 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 852831 15559904 ~ 15563836 (+) True G135744

Expression Profile