RNA id: TCONS_00010924


Basic Information

Item Value
RNA id TCONS_00010924
length 6864
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id XLOC_004694
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 21757817 ~ 21799396 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcggactcggttctcccgcatggcagagaCAAGAAGAGACAGATGAACAATAAAGAGAAGAAGACCACAAGACAACAACACTGAAAGCACATCTTCAACTCAGAGAGCCAAGAATGATGAGCTAACAAGAAGGCATGGCTgacattttcaacatttatttaaaaaaaaagtttgttatatttctcttttttgtcttttttattttgttgatacCTGAGAGAATCCTTCAATAGCTTTCCTTTCCAGTCTCATTTAAAACAGCTGTGGTGTGGACATCATCCCCGCTCTCTGCCTACACTCTCATGGCTGGGTGTATTTTCCCTCATGAACATATTCATGGACACAGTCAATTCAAATCAAGATAACAAATATCCAACTTCAAAGGAAACAGATAAATTGAGGGCTTTGACATCACAGTGCTGAGGGTGGCCAATTAAACTCAAAAATGATATTGCATTTACAGTTCTCTCAAGTCAATTAAAGCCGAAGTGTGAAATATCTGACTATTATGTGGAACAACGGATTCCCGGATTCTGCAATTGGCTGGGCTATGATGATGTAATGATAGCCTGCCTCAAAATGCCATTATTCACCAGGTGACAGTTTTTAATAGCACCTTTTTGGTCAAACCAGTCTACAAATGGCCTAAGGACTAAATGATAAATCTACATAAATAGCGcatttgcgatttttcaaaagcTATGATTGTCTTGCACATCATGTGTGGAAACTACCGTGATGTGATCAGTAGTAAACCTCCTCCGAAGGCCAGAGGGCCAAATATTCACTAAAGAAACCCAGGAAATCTTTATAGCGATAGGcgaataaacagatttattttattctgcTTTAATTGaactgctttcattgattcaatggGGTTAATAAACACACGACCACAACAATATGTGGTTTATTGGAGTTCTTCTTATTATAATATTCTTGATAATAAAGTATGTAATTATGCAATGTCTTAGGGCTGCTTAGAATACTATTAATAACTTTACGTGTGTTATTTTGTGTGTACATTATTTCAAATGCTTGACTGAAGTAAAGTTATGTCATAGCTTAGCAGAGTTTGGTATAAAAACGTGATTATATGTAGtacggctgcacaatatatcgtttcagcatcgaaatcatAATtaagcatgggacgataacctaATCGctatgtgatcattcgcaatagtcacatcgcaggatatgcaatgttgagtttgtattataatttatcatttgcatgtgtttgagATGgattttaaagcattcaggcatattaaattgtaccatttttgactttaacaatgatttattttattttattatttttatttttatcttttaattacTCTACTTGAATGCTGTTAGActttgaaaacaataaaacactttacatcagttgtatttttttcttgattgtatttagattgtttattagattttatggagattcTCTCCAACTGCAGAATCACCCCAATTAacctaacattataaattctttccaaatgaagatattaagtcatctggtgaaatttttATATTGAcaacagctagctctctgcaactctcacatggttgctcACTGacgctaagcagggctgcgcccagtcagtacctgactgggagaccacatgggaaagctaggttgctgctgctagtgaggccagcagggggtgctcaacctgcggtctgtgtgggtcctaaggCTGCAGTTTATTgaagggactctatactgcttggATTAGGTCCTGACTTGGTGGTTGTCAAAAATGTCCTACAATAAAAGGTTTGATTTTTGCTtctgttcatcatggcctcctaaccattcccatatcataattggcttaatcactctccaccaatcagctaatgtgtgtggtctggtgcaatatggcatCCGGGTGGATGCTGAACACCGGTTGTGaataaggagattccccccaaaaaatgtgtaaagcaccagaaaattgctatataaaatgtaagaaaattaaaaaatatatcacaCTGTTAaaattttccaatatcgtgctaTTATGTGGTATTTGCACATGCTTTCAGATTTAACATTAGCAACATTTACAAAAAAGGGCCAAAGTTCACTGAAAAGTGATTATCTGCGTTTTGACAATATTTTGGTTAGCTTTGCTGGAGATTTACAGCTGATTACAGAGCCAGCTAAAACTGACAATTGCAAATGACAATCTCATGTGttttatcgtgcagccctacatagCCTTATAACTATTTCAATCTGAATTTTATCTTAAAAGACAAACTTCGGCTTTAAGTCTGAGGGAGCTTAATCTGACAGGAAGTGACAGTAAAAAGGGGAGAGAAAACATTTCCTGGTATACTAAAGTATGCTAATGatgtttcattcatttcattcacaaATGCTGAGGTGCTGAGGGAAATTTACATTTCGTTTGTATGAACTGGCATTCTAGGTAGTACCAATCCACCGAACCATGAGAGCATTTGATGCAAACACATACATCATACATTAAAACACGAATCGACAGCGATTGACATCATTGGAGTCAGAGGAAAGTTGAACTAGTGCCCTCTTACTGTATGTTCGGGAGGTTTGACTAAGCAGGTATCAGGCAACAGTAAAGGCCTTCCGTCCCTTGACTATGACACTGACTGATGAACAGACAAAACAACTCATGCAGTTGCGGTGGATGGGTCTTTTTTGGGGTAGGGTGGGGTGGTTTAGCATTGCATAGACATTCTTGGTTCTGGGCGTTTTTGTTTTTTCCAAACAAGAAATATTACATAACACAAAATAAGGGCAAGAAACCAAACAAGACCACCACCAAAGCTAAACAAAACCAGTATCTACTGTTCCCCTTTGAGGAATCTGATTGGCAGTGGCGAGGCCAGCTAAGTGCTTCTGGGTAGCAGACCATACCCGTCTACATCTCTACCAGCAATCTGACTGAATAAAGGTAAGTCTGGCTACCCTGTCAGAAAGAGCGGTTTGAGTGCGGGGCTGAGGGCTGCGGGCGCATGTGGTTGGACAGTTAATTTCATGGGGCATTTCTTCATATCTTTATCGACCATGCACGTTTGCAAGTGTGCAAAAGCACATGTACAGATGTGTGAAGCATTTACAGAGCTACGATATCAGTTTTACTTTACAAAAGCGATGGGCGTAGGGGCTGCGTTCTGGCCTCGACATCCAGCTTGCATATGGATAACACATAGTGATTTAATCTTTCAATATCTTTTTGTATTTACATCCTTGGTTATGGCCAAAAAATCTGTAAaagtacaaaaaagaaaaaaaaaaacgaaacaaaacaagtATTGCACCTTGAAGGCGGGCAATATATACGCTTAGTAAGCTGTTTGTGTAACATCTTTTTGACAGCACTGTCCACTCTTGCTGGTGACCTGAAGTGAGGTTCTAGTTCCTGGGCTTGGATCCAGCCCAGTCCTGTCAGCTACATTCAACACCATGAAGCACTCTCTGCTGTCACAGATGCACACGACTCCCTTTTCAGCCTTCAAGCCACACCACATCCCGTCCACTCCCATTATGGCCTGTCGCGTCAGCGCAGGCGACGCCGTTCACAGACTAATGCATGCAACTGGTGCAAATCTGAAACAGATGGGCTTTGGAAGCTAAAGGAGGGGGCCGTGTGCTTCTGCGATCACATGAACGCTTACGCGCACATACACCCCATCGTACAGTTCAACACATGCACTGGACACACTTTGACACAAGTGTCAACGCAGATCAACACTCCTCCCAAGTTCATTTAagctttgtgttgtgtgaggTATGAGTAGATTGtgtttcagttctttttttttcagtttatgttGCATTATTTCTCAAATTTTTTAAGTCttctttcataaaaaaagaaaacaaaatataaaaaagaaaatattcctGTTTCTTGTTGTAAATTCCTCTTGATAAAAAGACGAAGGACAGATACACAGACAAACAGAGGAGTCAACTTATCATTACAATCTATAGTGAGGTGAAAAAGAGGTGAAATTCTCTAGTTTACACTGCACGCTTGGTCAAAAAAGTGACTACGGCTGTTGTTTTTCTCTCTTACATAGAGCAGTTAAGcattgaaaacaaacacacatttcagttcaaataataaaaaagaaaaacgaaaAAGAAAGAAACGAACAGCTCAAGCTCCGAGATTTGAATTCTTTGTTCTGgagtcattttttatttgtttaatgggTTTGTGATTCTTTTaccatatatttttgtttgtttgtttgttttctatctctttaaaataaaattagaagaTGAAGCAGCATCGAAACCCCCGCATTCACTCGATCCGCCAATCGCAACCACTGAGGCGTCACTCGTAATCCATACGGGAATGCTGACAGTTCCtctcattctgattggctgcctTCCTTCGCAACCTCATTATAGAGCAACTCCTCGGTTTGGCTCTCGTTCACTCTGCCGCTCCTCGTTCACATTCATTCGGTGCTGCCATTCTTTGCATGGCTTTGGCCGCTCCTTTGTCTCACAAAGAAAAGGCCCGTTTCTTTTGGGTGTTCATCTTAAGCCACCTCTGGCTTTGAAGGGGTGGGGGACACGCCGATCTGTTCATGAACTTTTCTGACTATTATGTCGTTGGTTAATGAGAAAGAACATGACCGGGACATTGCTTGACTTAATACTGACTGTGAGGGTGTGTTCAGGAGCATATGGAGGTGTGGCCTCTGTTTGACAGAGAGGTTGGGGGTGTGTCCTCAGAAAACATGCGTCTGAGCTGGAGGAACAGGGAAGGGGGGGCCATCATGCCTTAGTGCAAAAACTCCTTAAAAGGTGTCAGGGGTTGAATCGTCTCTGAAGATTTGGCTCTTTCAAAGCTAAGTGCTCTCATTCAGCTGCTAGCTTCCCCCGCATCCCCTGCCTCACCTTGAAGAAACCAGTCGACACCTTGTTCCGCGTTGCAAATTACTGCTCGGTATCGGAAATGAAACAGCAATAGACCCATTTTGGTTTAGGTCTGGCCACCTCGGGTCCTTCATCTGTAGTTCTCTCCACGGCTCCTCTTCCTAGTCAGCGGCATGTACGTTAACTAGCTTCCGTTTTGACGGAAATCGAAGTGACACTTGGTCCcacatgaaaagaaaaacaagaaacaaaaaaagcTCATCCGAAACAGTTTTTTCTCTTTCAGCCCAGAGTGAAGAAGACCTTGCAGAAATCTGACAGGCTACGATGAGGAATGGCAGGCCCTCCTGTCTGCAGTGGTATTTCAACATAACTGAGAAGAAAGTGAGTGTTTCTTTCCTGGCTGtcagtgtgtgtaggtgtgtgtaaatgtaaatgtgtatgtGGCTGAGGGTAGCTGCCCCGTGTCCAGAGGTGAGGTAGAACCTGTCAGCACAGAGGCAGTCTTGGAGCCACAGCCAGCCAGAGGTGTGCCCACATTTgaggtaaaacaaaaaacaacacaaagaaaaaacattGACGACAGCCAGTCCACCATGGCCCGTCAGGAGTGTGCGCGTGTGCTCACACAGACCGGGCGACAGTAGCATCTGAGCAGAGCACAGATGGGCTGGACTGAACTCTCAAAGCCCTGCATGGGAGTCCAGAACTACAGCACTGCAGTGCATACAGTAAAAATGAGGCATTCGAGTTTTGAGGTGTGTGTTTTAGTATTGTGTGTGTGCTGGGCCTGGGAGTACTGTAATACTGGCTCCCTCCCAACACCTGTAAAACACCAATCAGTGCATATCGGAGGTGTAGGGGTGCCTGGATTCTGTCTCTCTATGTGACGTTCCTAGGACAAAGAGGGACTCGCAGAGCCCTCAGATAAGCCTAGACCATAGCAAGAACAAACCACACACAACGTCTGTACTGTAAGTGGCACCCCCGAACAAGCACTTAATTGCTGACCGAGAGCTTTCAAACGGTCTGTGTCCTACAGAGAAGGGAGGGGGGCATATTCTTGAAAGGTCCCAAATCATTTTGAGTAGCTTTATTTAAATATAGCACCTGATTTGGTATCAAAAATGTCCTCCCGCTCCGCACACAGGCTCAATGTCAAAGAGAATCATGAGGTCTGAGCATGAGATATCGACAGTTAACATCTCAAGAACTCTATGAAATTAGCTGACCACTGCACAACCTGGTGGAGGAATCTATAAGCCAGCTGCCATCCAGTCGAAGCAGAGGGCACCTCCAGTGGTGGCATGACAGTAGTGCAGTCTGTACAAATGCATACAAGCTCATCAGAAGACTCAAGACGTGTTAGTACTGCATCTGTAAGCACACTtataacagtgtgtgtgtatgtgtagatGTATATCCTGTGCCTAAGGTGTTGGTAAACCAGTATAAGACATCATGCCGAGACAGAAGGGCCACACGTGGGAGTTTAGTTGATGAGGGAGGGGCACAGAGTTTTCTGTGAAAAGCCAAAAAATGAACACAAAGTTGTTGAACCCCCATATGAAAGCCTTTCTGAAGGTGACCCCTGCCAATGCAATTGCTGCTGGTGAGTTTGGTGCGTGGAAGGGGGTGACACGACTTGTGGAACACGGTTACGAAACGTTCCTGATTCTCTTGCCGCAGTTCGCCGGGACGTCACACGTCCTGATCCTCGAAGACCTCCAGGAAAAGTGGGGGAAAGAGTTCAGTGGGGCATTCCACCTTCATGTGCAGGAAGCGACTGGCGTGGCAGGCTCCGATCATCCGCAGGTCCGTCACCTTCATCAGCAGCTTGGGCCAGAAATGAGGAATGTTGTGCTTGCGATAGTTGATGTAGTGTTCGAATGCTAAGAGGTACATCTCCTGGCACTTCTCGATCTTCTCCACACACGTCAGACCTGTACGATCTGGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010922 lncRNA upstream 650830 20806915 ~ 21106987 (+) False XLOC_004689
TCONS_00009291 lncRNA upstream 871335 20806897 ~ 20886482 (+) False XLOC_004689
TCONS_00010923 lncRNA upstream 871335 20807009 ~ 20886482 (+) True XLOC_004689
TCONS_00010921 lncRNA upstream 993644 20721097 ~ 20764173 (+) True XLOC_004688
TCONS_00009278 lncRNA upstream 1136717 20620199 ~ 20621100 (+) True XLOC_004684
TCONS_00010926 lncRNA downstream 218550 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010734 lncRNA downstream 459566 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010927 lncRNA downstream 490584 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00009303 lncRNA downstream 624557 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010735 lncRNA downstream 818992 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00009298 mRNA upstream 9809 21697540 ~ 21748008 (+) True XLOC_004693
TCONS_00009297 mRNA upstream 69730 21684239 ~ 21688087 (+) True XLOC_004692
TCONS_00009292 mRNA upstream 204180 21298317 ~ 21553637 (+) False XLOC_004690
TCONS_00009296 mRNA upstream 208670 21525496 ~ 21549147 (+) True XLOC_004690
TCONS_00009293 mRNA upstream 208683 21299338 ~ 21549134 (+) False XLOC_004690
TCONS_00009300 mRNA downstream 459566 22258962 ~ 22304841 (+) False XLOC_004696
TCONS_00009301 mRNA downstream 604712 22404108 ~ 22445061 (+) False XLOC_004697
TCONS_00009302 mRNA downstream 608456 22407852 ~ 22444387 (+) False XLOC_004697
TCONS_00009305 mRNA downstream 760671 22560067 ~ 22573297 (+) True XLOC_004698
TCONS_00009306 mRNA downstream 777008 22576404 ~ 22604311 (+) False XLOC_004699
TCONS_00009295 other upstream 320359 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1065804 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009270 other upstream 1258737 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009249 other upstream 1853402 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 1860890 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009304 other downstream 644233 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 779008 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009313 other downstream 858527 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 878557 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 1122081 22921477 ~ 22932021 (+) False XLOC_004706

Expression Profile

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