RNA id: TU170437


Basic Information

Item Value
RNA id TU170437
length 342
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G135657
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14811738 ~ 14818725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACATTGACTACCTAGGCCACTGAAATACACCTTTGAAGTAATTCAGAAGGTTTGTATGCAAATGGGAGAACAGTGCTCAGCAAAGGTTCTGAGTCTTAAAAACAGACGACTAATGTAGAAAGCATGTCGGTTCAGACTTTGGTGCCTCTGTAAGTTTGAAAGATCCTACAGTGCTGTATtggtgacatttttgttttataactattttgttttatcctgGAGTACCTCTGTATATGCTGCTCATAATTATAATGTGGGCTTTGATTTTTTTCATCAACCCTGGATTTAACTAATATTTGACGTTAATTTGGCTTGCCGGCTTGTAGTGCTGTGAGAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170436 lncRNA upstream 6785 14804480 ~ 14804953 (+) True G135656
TU170303 lncRNA upstream 95857 14713780 ~ 14715881 (+) True AMCG00012294
TU170391 lncRNA upstream 104665 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA upstream 134238 14675852 ~ 14677500 (+) True G135634
TU170353 lncRNA upstream 201001 14570375 ~ 14610737 (+) True G135595
TU170469 lncRNA downstream 155646 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA downstream 155646 14974371 ~ 14979342 (+) False AMCG00012300
TU170471 lncRNA downstream 155646 14974371 ~ 14979342 (+) False AMCG00012300
TU170474 lncRNA downstream 155646 14974371 ~ 14979342 (+) False AMCG00012300
TU170454 lncRNA downstream 230910 15049635 ~ 15245994 (+) True AMCG00012300
AMCG00012294 mRNA upstream 84955 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012293 mRNA upstream 156623 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 172771 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 183773 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012279 mRNA upstream 241546 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012298 mRNA downstream 95859 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012300 mRNA downstream 145319 14964044 ~ 15134139 (+) False AMCG00012300
AMCG00012305 mRNA downstream 577627 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012303 mRNA downstream 580708 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012306 mRNA downstream 611563 15430288 ~ 15430887 (+) True AMCG00012306
TU170413 other upstream 99097 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 225968 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 376010 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 422053 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 433043 14377672 ~ 14378695 (+) False G135544
TU170424 other downstream 169573 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 301000 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 633344 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 741179 15559904 ~ 15563836 (+) True G135744
TU170595 other downstream 1092523 15911248 ~ 15930848 (+) True G135781

Expression Profile