RNA id: TU170455



Basic Information


Item Value
RNA id TU170455
length 880
RNA type TUCP
GC content 0.48
exon number 9
gene id G135670
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15119725 ~ 15623881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCCAGAGTCCACAGTGGTCAGTATTGGTGCTGACAGCTCCAAGACCCTGTAAATGTGATCTGATCTGGGTGTCTGATTCTGTTTCATCATCAAGAAGCCGACGCATCACAAGCCTTCATCAAAGCAACTTCGTCTGACCGCAGTATAACAGATATGAAGAAAGACAACCTGTGTGAGAATTTGGACCATAAACCTGCCAATCCTTCATCAACGATGAAACAACCTGAACCAGGGACATCCCTGCCAAGAAGCACTGAAGGACCTCAGAAGAGCAGTGATGGGAGAGTGTCTCTGTACAAGAGGATCTCACTGCTCCTTGCCTGTGTGTGGATCCTCAGTCTCATCTCTGGACTGGCTGTGTACTttttccttgGTTCAGTAGACAAGCAGAGTGAGATGTTGAAGCTGCAGGAGAACAACACCGCTCGGATAACTGagctgcagagagaaaaggagaCCCTTCAGACAGAGCATTCAGTCTTACTGAGATCCAACACTGAACTGAAAAAGCAACTGCAGAACAAGGAGAATGAAAACTCAAATCTACAGAGCAAATACAGCAATGTGAAGGCTGGCTGTGATGTGTGGAAGTGGCTTCGTTATGTAGCagTGGATGTGACTCTGGACCCCAATACAGTGAATCCCTTTCTCATCCTGTCCGAGGATGGGAAACAAGTGAGACATGGAGATGAACGACAGGTTCTCCGCAACAATCCAAAGAGATTTGATTATGTTATCTGTGTCCTGGGAAAGGAGAGTTTCAGTTCAGGGAGACACTACTGGGAAGTGGAGGTGGGGGAGAAGACTGCGTGGACTTTAGGAGTTGCCAGAGAGTCCATCAACAGGAAGGGGAAGATTACAGTGAGCCCTGGGCTTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170469 lncRNA upstream 140383 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA upstream 140383 14974371 ~ 14979342 (+) False AMCG00012300
TU170471 lncRNA upstream 140383 14974371 ~ 14979342 (+) False AMCG00012300
TU170474 lncRNA upstream 140383 14974371 ~ 14979342 (+) False AMCG00012300
TU170437 lncRNA upstream 301000 14811738 ~ 14818725 (+) True G135657
TU170557 lncRNA downstream 60597 15684478 ~ 15689338 (+) True AMCG00012308
TU170447 lncRNA downstream 178548 15802429 ~ 15806653 (+) True G135666
TU170578 lncRNA downstream 188032 15811913 ~ 15812121 (+) True G135768
TU170590 lncRNA downstream 255253 15879134 ~ 15879504 (+) True G135779
TU170591 lncRNA downstream 255253 15879134 ~ 15900621 (+) False G135779
AMCG00012298 mRNA upstream 204152 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012294 mRNA upstream 392942 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012293 mRNA upstream 464610 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 480758 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 491760 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012309 mRNA downstream 19275 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012308 mRNA downstream 60626 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012310 mRNA downstream 140148 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012313 mRNA downstream 264817 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012316 mRNA downstream 317751 15941632 ~ 15984389 (+) True AMCG00012316
TU170424 other upstream 109922 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 407084 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 533955 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 683997 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 730040 14388075 ~ 14389685 (+) False AMCG00012267
TU170595 other downstream 287367 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 552518 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 626367 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 769818 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 1019876 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile