RNA id: TU170550


Basic Information

Item Value
RNA id TU170550
length 1162
RNA type TUCP
GC content 0.51
exon number 4
gene id G135744
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15559904 ~ 15563836 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGATGCATACTCATGCTGGGTAGAGCTGCTGAACTTTGCCCTTcttttttaagataaaaaaaacacgGGTGCACTCGGAGCCCAGGCCATGTGTAGGGGGATAAGGATCTGTGGCTGTGCTGAGTGTCAGTGCAGTGAGAGGACAAGGGCAACACAGGAGATCAGGGAGTTTAGAGTTGGAGCTGTGACTCTCACCTGCAGCTCCCCCACCGAGACTCTCTGGTCTGCGCAGTCGGGACACTGCTGCGTCTCTGCTGTAGGTCTTCAGTGGAAATAACGAGACCTGGGAGCCTTATTGACCACAGTGTAGAGTCTGAAGAGCTGCTCTGCACAGGACTGAGTGAGATCCTTCAGTCCAGAGCACAAGCTGAGATGACATCAGTAATTGGTGAGACGCTGTTGATTTCCTCCTCGTCTCTCTCATTGCTTCTCTGCCAATCGCTGTGGAAATGGCTTCCCCCAGTATTCCCCTGTGTGAAGAGCAGTTCCAGTGCTCCATATGTCTGGATATATTCTCCAAACCAGTCTCCACTCCCTGTGGGCACAACTTCTGCATGGCGTGCATTGGAAGGTACTGGGACAGCAGTGATGTGTGTCAATGCCCAATGTGTAAGGAGACTTTCTCTAGGAGGCCTGACCTACGTGTTAACACCTTCATTGCTGGGATGGCTGAGCAGTTGAAGAAGGTAAGGCTCAGCCCTCCTGAGGAGCTCTCTGCTGAGCCTGGAGAAGTGCCCTGTGATTTCTGCACTGGGAGAAGGCTCAGGGCCGTGAAATCCTGCCTGGTGTGTCTGGCCTCTTACTGTATGACTCACATCCAGCCTCACTTTGGAGAAACTGCCTTCAGGAAACATAAACTGATTGACCCTGTGATCAATCTTGAAGACATGCTGTGCAGGAAGCATGAGAGAGTTCTGGAGCTGTTCTGTAGAGATgaccaaatatgtatttgtgagtTCTGCAGTGAGGCAGACCACAGGATACACAGCACTGTACCTTTAGAGGAAGAATGGAGAGAGAAGAAGGCTCAGCTGGGGGAGACTGAGGCAGAAGTGCAACAGAAGATCCAGGACAGACTGAAGAAGGTGCAGGAGATCAAACAGGCAGTGGAGCTCAGCAGACTTGGTGCCCAGAGAGAGGCTGAAGACAGTGAGCAGGNN

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170523 lncRNA upstream 202179 15351885 ~ 15357725 (+) True G135721
TU170454 lncRNA upstream 313910 15049635 ~ 15245994 (+) True AMCG00012300
TU170453 lncRNA upstream 323751 15232787 ~ 15236153 (+) False AMCG00012300
TU170470 lncRNA upstream 580562 14974371 ~ 14979342 (+) False AMCG00012300
TU170557 lncRNA downstream 120642 15684478 ~ 15689338 (+) True AMCG00012308
TU170447 lncRNA downstream 238593 15802429 ~ 15806653 (+) True G135666
TU170578 lncRNA downstream 248077 15811913 ~ 15812121 (+) True G135768
TU170590 lncRNA downstream 315298 15879134 ~ 15879504 (+) True G135779
TU170591 lncRNA downstream 315298 15879134 ~ 15900621 (+) False G135779
AMCG00012307 mRNA upstream 29525 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012302 mRNA upstream 85378 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012306 mRNA upstream 129017 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012303 mRNA upstream 159466 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012305 mRNA upstream 162523 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012309 mRNA downstream 79320 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012308 mRNA downstream 120671 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012310 mRNA downstream 200193 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012313 mRNA downstream 324862 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012316 mRNA downstream 377796 15941632 ~ 15984389 (+) True AMCG00012316
TU170537 other upstream 80355 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 550101 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 847263 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 974134 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 1124176 14434965 ~ 14435728 (+) True G135566
TU170595 other downstream 347412 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 612563 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 686412 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 829863 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 1079921 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU374195 True 676 TUCP 0.48 2 NW_019172193.1 24903 ~ 25692 (+)