RNA id: TU170578


Basic Information

Item Value
RNA id TU170578
length 209
lncRNA type intronic
GC content 0.44
exon number 1
gene id G135768
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15811913 ~ 15812121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatgagtgaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagtgaaaatctgtggagggagctgaaggttcgagatGCCAAACGTCAGCtgcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatcccNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170448 lncRNA upstream 3392 15166544 ~ 15808521 (+) False AMCG00012309
TU170447 lncRNA upstream 5260 15802429 ~ 15806653 (+) True G135666
TU170557 lncRNA upstream 122575 15684478 ~ 15689338 (+) True AMCG00012308
TU170523 lncRNA upstream 454188 15351885 ~ 15357725 (+) True G135721
TU170454 lncRNA upstream 565919 15049635 ~ 15245994 (+) True AMCG00012300
TU170590 lncRNA downstream 67013 15879134 ~ 15879504 (+) True G135779
TU170591 lncRNA downstream 67013 15879134 ~ 15900621 (+) False G135779
TU170939 lncRNA downstream 290773 16102894 ~ 16103304 (+) True G136025
TU170940 lncRNA downstream 319710 16131831 ~ 16136715 (+) True AMCG00012324
TU170957 lncRNA downstream 359618 16171739 ~ 16172095 (+) True G136040
AMCG00012308 mRNA upstream 122623 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012309 mRNA upstream 132650 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012307 mRNA upstream 281534 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012302 mRNA upstream 337387 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012306 mRNA upstream 381026 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012313 mRNA downstream 76577 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012316 mRNA downstream 129511 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012317 mRNA downstream 174938 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012321 mRNA downstream 245732 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012324 mRNA downstream 292784 16104905 ~ 16142641 (+) False AMCG00012324
TU170455 other upstream 188032 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 248077 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 332364 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 802110 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 1099272 14710244 ~ 14712641 (+) False AMCG00012294
TU170595 other downstream 99127 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 364278 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 438127 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 581578 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 831636 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile