RNA id: TU170591



Basic Information


Item Value
RNA id TU170591
length 328
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G135779
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15879134 ~ 15900621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatacacacacacacacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170578 lncRNA upstream 67013 15811913 ~ 15812121 (+) True G135768
TU170447 lncRNA upstream 72481 15802429 ~ 15806653 (+) True G135666
TU170557 lncRNA upstream 189796 15684478 ~ 15689338 (+) True AMCG00012308
TU170523 lncRNA upstream 521409 15351885 ~ 15357725 (+) True G135721
TU170453 lncRNA upstream 642981 15232787 ~ 15236153 (+) False AMCG00012300
TU170939 lncRNA downstream 202273 16102894 ~ 16103304 (+) True G136025
TU170940 lncRNA downstream 231210 16131831 ~ 16136715 (+) True AMCG00012324
TU170957 lncRNA downstream 271118 16171739 ~ 16172095 (+) True G136040
TU170969 lncRNA downstream 293354 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 637441 16538062 ~ 16539149 (+) True G136177
AMCG00012310 mRNA upstream 63420 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012308 mRNA upstream 189844 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012309 mRNA upstream 199871 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012307 mRNA upstream 348755 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012302 mRNA upstream 404608 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012316 mRNA downstream 41011 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012317 mRNA downstream 86438 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012321 mRNA downstream 157232 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012324 mRNA downstream 204284 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012320 mRNA downstream 242029 16142650 ~ 16155119 (+) True AMCG00012320
TU170455 other upstream 255253 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 315298 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 399585 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 869331 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 1166493 14710244 ~ 14712641 (+) False AMCG00012294
TU170595 other downstream 10627 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 275778 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 349627 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 493078 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 743136 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile