RNA id: TU170620


Basic Information

Item Value
RNA id TU170620
length 754
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G135799
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14434975 ~ 14435728 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGGTGAATCAGGCCTTTATTGGTGGTGACTGTGCAGTGCAGCGTCCAGTACACAGTGGACAGACAGCACACCCAGACAAAATGTGACATTACGTATTTAGTCcatattttcaaattcaatcattgaccagtcttggccctTTTTGTCCAGCTGGCTTGCCATACCACTCTGAGTGCGTATCCATCTCGCATGACATATAATTACTTCTGAACATGTTGATTTAGgtggaaatctgcatttttaaatttacattcaaCAGGTTATCGTTGGGCAGTTGAGTATCCATAGGCCAGTCTGGCTCAAAGTCCAGAGACGTTTATTAGTCCCACTCTGTCCCTGCTGCAATGTAGTGTATCGTAGAGTattgcagtgtagtacagtgcaatATAGcacagtgtggtgtagtgtaatgcagtatagtatagtggTGTAGTATACTGTAGCATAGTGTATTACATTGCAgaacagtgtagtatagtgtaatGCAGTAAAGTATAGTGGTAGTGcaatacagtgtagtatagtgtggTGCAGTGCAGAATAGTGTGGTGCAGCATAGTGTaatgcagtatagtgtagtacagtgcagtttaGTGTGATGCAGCGTAGTGTaatgcagtatagtgtagtacagtgcagtttaGTGTGGTGCAGTGTACAGTGGCATTTCCAGAACATTTTCAATGGGGTGGCCAAGTGGGGGCACAGGGCTATTTTAGGAGGGCCATCCTTATTTCATCAACcacattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170283 lncRNA downstream 66578 14368035 ~ 14368397 (-) True G135551
TU170248 lncRNA downstream 132606 14297735 ~ 14302369 (-) False G135525
TU170249 lncRNA downstream 134666 14297735 ~ 14300309 (-) True G135525
TU170197 lncRNA downstream 233089 14200261 ~ 14201886 (-) True G135481
TU170202 lncRNA downstream 241603 14176897 ~ 14193372 (-) True G135483
TU170623 lncRNA upstream 5037 14440765 ~ 14442102 (-) True G135802
TU170678 lncRNA upstream 173082 14608810 ~ 14650327 (-) False AMCG00012291
TU170700 lncRNA upstream 237283 14673011 ~ 14691919 (-) True G135851
TU170713 lncRNA upstream 320794 14756522 ~ 14757029 (-) True G135859
TU170718 lncRNA upstream 383127 14818855 ~ 14819936 (-) True G135864
AMCG00012269 mRNA downstream 48347 14377818 ~ 14386628 (-) True AMCG00012269
AMCG00012270 mRNA downstream 57334 14371954 ~ 14377641 (-) True AMCG00012270
AMCG00012271 mRNA downstream 102154 14328118 ~ 14332821 (-) True AMCG00012271
AMCG00012272 mRNA downstream 141437 14280936 ~ 14293538 (-) True AMCG00012272
AMCG00012264 mRNA downstream 203606 14224711 ~ 14231369 (-) True AMCG00012264
AMCG00012283 mRNA upstream 87377 14523105 ~ 14523458 (-) True AMCG00012283
AMCG00012282 mRNA upstream 88093 14523821 ~ 14527422 (-) True AMCG00012282
AMCG00012281 mRNA upstream 95727 14531455 ~ 14534440 (-) False AMCG00012281
AMCG00012280 mRNA upstream 103063 14538791 ~ 14563905 (-) True AMCG00012280
AMCG00012290 mRNA upstream 136284 14572012 ~ 14584023 (-) True AMCG00012290
TU170164 other downstream 340287 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 729363 13704846 ~ 13705612 (-) True G135318
TU169886 other downstream 910294 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 913047 13520856 ~ 13521928 (-) False AMCG00012233
TU169801 other downstream 1135539 13298444 ~ 13299436 (-) False AMCG00012226
TU170639 other upstream 84102 14519830 ~ 14523063 (-) True G135814
TU170641 other upstream 95745 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 163494 14599222 ~ 14602802 (-) False AMCG00012292
TU170709 other upstream 281744 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 289782 14725510 ~ 14794158 (-) True G135857

Expression Profile