RNA id: TU170639


Basic Information

Item Value
RNA id TU170639
length 1548
RNA type TUCP
GC content 0.50
exon number 3
gene id G135814
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14519830 ~ 14523063 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGACGGAGACGAGCGCGAGAGGGACGGAGATAAAGACAGCCAGTTGCTGTTGTCCAATCAGATCGCGGCAGCAGGCCGTCAAGGGGCCGGGCACAGAGCGGGCTGGTCGCCGTGGAAACTCAGTCTCCACCTCCCCTGCCTGCTTCCTCCCGGCAGAacgagcaagagagagagcgagagagacactCTAAGCCCCGGCCTCTCGCTGTGTGGGTACAGCAGTGAGGTGCCGTCTGGCTCCAGATTGGCCAGGGGCCAGCGCCACTCAGGACATGTCTCCACAGCAACAGGATGCTGTAGTGcaagaggagaggggagaaacGAAGGACGGAGAGgcggagagagggaagaaaaggTGGACAGAGACAATGGGCAAGCAGAGAGAACTGTGCAGGAGAAGTGGATAAGATTGTTGAGTAAGGGATCAGGGCATAGAAAGTGGTGTTCCAAGGCCcgtgaaagagagggaggagagaggctGGAGGGAAAAtgggagagggatggagagaaggagggagaatGGTCAGGAGGAGTGTAGGGAAGATTGCATGGGAGAGGGTGGAGCAGTGTGTTGGGATGGAGCGAGTGAGAGAGGAATGAGAGACAacagaaagaaggagagaatgGGAGATTGGAGAGGAGGGGCAGGGGCAAAGTGGGTAGTTAGTTGATTAATTAGTTAGATCATTAGTTTGTGTTTCGTTAGCAAGTCTGCTTCCATATCAATTGCTGATCCCAAGACAAGGAATTAATGACGAACCTAACATTAAAACCAATGGTCTGTAAatgataaatgtattattattattattattattattattgttattattattttgtaattttgtgaaaATTGCAAGGAGCtgtaaaattatgtaaattccTGTAAAATATCTATATTGCTTGACCTggttttctgtctgtgtgtctgactgattgtctgtctgtctgtgtgagtgagtgtgtctctctgcctctctgtgtctgaCTGAGTGCCTGTGTCCTTTTGTGTGCTgttcagtctgtctgtgtgtccaacTTAGGTCTGTTCTCcactcccccacccctctctctctgtgtatgtgtgtgtgtgtcaatgccCCCTCCGTGTGTGTCAACAGAGCCCCTCTCTCCGtttgtgcttgtgtgtctgtgtgtatgtcagagtcctctctctctccgtgtgtgtgtttcagagccctctctctctgtgtatgtatgtgtgtgtgtgtcagagcgCCTCTCTCCCTGTGNNNNtgtgtgtgtgtgtgtgtgtcagagtgcctctctccctgtgtgtgtgtgtgcgtgtcagagcgcctctctccctgtgtgtgtcagtgctgtgctcTCTGTATTAACCACTGTAAGTACAGAAGCCTGCGACCACTGTGTCCGTTTCTCTTTGTCAGTGCTGGTGAAACCTATAAATACCTGTAAATACAGACATATACGACTAAAGGCAAGGATGTTTAATTTTGTCCGACTGTTTGGTGTGAGTTTGTATAAGatgttgtgtgtggggggtggtgggCGGGGGCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170623 lncRNA downstream 77728 14440765 ~ 14442102 (-) True G135802
TU170620 lncRNA downstream 84102 14434975 ~ 14435728 (-) True G135799
TU170283 lncRNA downstream 151433 14368035 ~ 14368397 (-) True G135551
TU170248 lncRNA downstream 217461 14297735 ~ 14302369 (-) False G135525
TU170249 lncRNA downstream 219521 14297735 ~ 14300309 (-) True G135525
TU170678 lncRNA upstream 85747 14608810 ~ 14650327 (-) False AMCG00012291
TU170700 lncRNA upstream 149948 14673011 ~ 14691919 (-) True G135851
TU170713 lncRNA upstream 233459 14756522 ~ 14757029 (-) True G135859
TU170718 lncRNA upstream 295792 14818855 ~ 14819936 (-) True G135864
TU170789 lncRNA upstream 981354 15504417 ~ 15507652 (-) True G135913
AMCG00012269 mRNA downstream 133202 14377818 ~ 14386628 (-) True AMCG00012269
AMCG00012270 mRNA downstream 142189 14371954 ~ 14377641 (-) True AMCG00012270
AMCG00012271 mRNA downstream 187009 14328118 ~ 14332821 (-) True AMCG00012271
AMCG00012272 mRNA downstream 226292 14280936 ~ 14293538 (-) True AMCG00012272
AMCG00012264 mRNA downstream 288461 14224711 ~ 14231369 (-) True AMCG00012264
AMCG00012283 mRNA upstream 42 14523105 ~ 14523458 (-) True AMCG00012283
AMCG00012282 mRNA upstream 758 14523821 ~ 14527422 (-) True AMCG00012282
AMCG00012281 mRNA upstream 8392 14531455 ~ 14534440 (-) False AMCG00012281
AMCG00012280 mRNA upstream 15728 14538791 ~ 14563905 (-) True AMCG00012280
AMCG00012290 mRNA upstream 48949 14572012 ~ 14584023 (-) True AMCG00012290
TU170164 other downstream 425142 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 814218 13704846 ~ 13705612 (-) True G135318
TU169886 other downstream 995149 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 997902 13520856 ~ 13521928 (-) False AMCG00012233
TU169801 other downstream 1220394 13298444 ~ 13299436 (-) False AMCG00012226
TU170641 other upstream 8410 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 76159 14599222 ~ 14602802 (-) False AMCG00012292
TU170709 other upstream 194409 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 202447 14725510 ~ 14794158 (-) True G135857
TU170840 other upstream 1183871 15706934 ~ 15732134 (-) False G135957

Expression Profile