RNA id: TU170709


Basic Information

Item Value
RNA id TU170709
length 1104
RNA type TUCP
GC content 0.53
exon number 4
gene id G135856
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14717472 ~ 14721170 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGTGCCTCCTCCCCCAGCTGAGATCAGGGGTCAGGCCTGCGAGTCTGTGGGGGTGGGCGTCCCTGATGGCGGTGTTTTTAGGGCAGTGCGGCAGGAAGTGGGCCTCATCCTCCACTTCTCCCACGgcccacactctctctcctctctgccggGGTCggcctgtctctctccccaggctgTGGCAGCTCAGGCTGTAAAGGCTCGGGATTCGTCTCTGTCAGGTGTCTCGCTTTAAAGTTAACTTACACAGTTAAAAAGTTTTTCCAGTCAACGCAGTACATGTGTCCAAGGCGTGACAAGGGCAGGGGAGCACGGCTGTGAGGCGCTCTGAGGGGGGAGCCGCCGTGTCAGTCTGCCTAGATTTGTAGAGACTGTTATGAGTCTGTCAGTGTGGATTAGGACTGACTTGAATGGTTTGGCAGCGGTTTCAGTTAGTAgtagagcgagagagagagagagagagagagagagattgagggagaggggggcaAAATGGGACAGAGAGAATGACAATAGAAATGAAAGGGTGAATGAGGTGAAGAggctggcagagagagagagagagagacagaatgttAGGTCATGGAGAAATAGGGAGGGGGGAGAAGTGtgtaaatgtgtctgtgtgtgagagagagagagagatagagagtggGAGTGTACTGTTCTAGCCTGGTAGGTCAGAGAAGAaaagagggaggggagaagTGTATaagtgtgtgcgagagagaaagagagacgggGGGTGCAATTGTGATTTTTCGTTGGAAGCAGGCAACCAGCAATCGCACGCAggatggAGGCGATTCGTCCGAAGCTGTTTGATTTTCGGGGGGTGGCCATGACTAACTATTTCACTGACAACTTTGACAATGTGGAGAAATTCTCAGCCAAGCCCGATGACATTCTCATTGCCACCTACCCAAAAGCAGgcaCTACCTGGGTGTCCCACATGCTGGATCAGATCTATTTTGGGGAGAACTCTGAGACCCTGAAATCCCTCCCCGTCTACGAGAGGGTGCCCTTCTTGGAGATGTGTGCCCCCAAACACATGCCAGgtgtggAGCTGATAGAGAACATGACCTCATCTCCTCGCCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170700 lncRNA downstream 25553 14673011 ~ 14691919 (-) True G135851
TU170678 lncRNA downstream 67145 14608810 ~ 14650327 (-) False AMCG00012291
TU170623 lncRNA downstream 275370 14440765 ~ 14442102 (-) True G135802
TU170620 lncRNA downstream 281744 14434975 ~ 14435728 (-) True G135799
TU170283 lncRNA downstream 349075 14368035 ~ 14368397 (-) True G135551
TU170713 lncRNA upstream 35352 14756522 ~ 14757029 (-) True G135859
TU170718 lncRNA upstream 97685 14818855 ~ 14819936 (-) True G135864
TU170789 lncRNA upstream 783247 15504417 ~ 15507652 (-) True G135913
TU170843 lncRNA upstream 985764 15706934 ~ 15709225 (-) True G135957
TU170870 lncRNA upstream 1089626 15810796 ~ 15811753 (-) True G135973
AMCG00012297 mRNA downstream 17337 14698531 ~ 14700135 (-) True AMCG00012297
AMCG00012296 mRNA downstream 23321 14691414 ~ 14694151 (-) True AMCG00012296
AMCG00012287 mRNA downstream 33672 14673333 ~ 14683800 (-) True AMCG00012287
AMCG00012286 mRNA downstream 48785 14666123 ~ 14668687 (-) True AMCG00012286
AMCG00012291 mRNA downstream 97025 14609229 ~ 14620447 (-) True AMCG00012291
AMCG00012295 mRNA upstream 23145 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012299 mRNA upstream 242855 14964025 ~ 15050603 (-) True AMCG00012299
AMCG00012301 mRNA upstream 342959 15064129 ~ 15105136 (-) True AMCG00012301
AMCG00012304 mRNA upstream 653179 15374349 ~ 15378863 (-) True AMCG00012304
AMCG00012312 mRNA upstream 1042849 15764019 ~ 15803519 (-) True AMCG00012312
TU170666 other downstream 114670 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 183200 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 194409 14519830 ~ 14523063 (-) True G135814
TU170164 other downstream 622784 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 1011860 13704846 ~ 13705612 (-) True G135318
TU170710 other upstream 4340 14725510 ~ 14794158 (-) True G135857
TU170840 other upstream 985764 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 1200434 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 1498956 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 1591551 16312721 ~ 16314393 (-) True G136125

Expression Profile