RNA id: TU170713


Basic Information

Item Value
RNA id TU170713
length 487
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G135859
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14756522 ~ 14757029 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTTGTGGATTTTTGAACTACccttacaacacacacactactaaATAAATGTTACCAGCGCCGGCGGCCCGGGCCTCCCCCTCCGTCCGGCCGCAGCTCCACTCTCTCCTCCCGGCTCCTCGGCTCTGCACAGGCGGCCCGTCCGCTCCGGAGCTCCAGTGACACACAGCCGCCTCCCCCGCCGCCCTGAGCTCCTGCAGCCTCCGCCTCAGCGCCTcgttttctctctgtctgcggGTTATTTCCACCCGGGACTCCGACACCGTCTCTTCCACCGCCTTCCAGATCTCACACAGGGCGGCTCTCATCAGCTCGGCCAGCGCCGAGGACAGGCGGCCGCTCAGAGCCGCGGACACCGACATGCTGTGTGTAAGAGGTGAGTAGTTACTCAGTGCGGGTCAGTACTGTGTGAGTCCGTGTTGAGTAGAAAGTGAAACCGCTGCTTCTACTTGTTTCCCTCGGTTTGAACTGAAGCACAAACTCCGC

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170700 lncRNA downstream 64603 14673011 ~ 14691919 (-) True G135851
TU170678 lncRNA downstream 106195 14608810 ~ 14650327 (-) False AMCG00012291
TU170623 lncRNA downstream 314420 14440765 ~ 14442102 (-) True G135802
TU170620 lncRNA downstream 320794 14434975 ~ 14435728 (-) True G135799
TU170283 lncRNA downstream 388125 14368035 ~ 14368397 (-) True G135551
TU170718 lncRNA upstream 61826 14818855 ~ 14819936 (-) True G135864
TU170789 lncRNA upstream 747388 15504417 ~ 15507652 (-) True G135913
TU170843 lncRNA upstream 949905 15706934 ~ 15709225 (-) True G135957
TU170870 lncRNA upstream 1053767 15810796 ~ 15811753 (-) True G135973
TU170872 lncRNA upstream 1056091 15813120 ~ 15816171 (-) True G135975
AMCG00012295 mRNA downstream 2513 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012297 mRNA downstream 56387 14698531 ~ 14700135 (-) True AMCG00012297
AMCG00012296 mRNA downstream 62371 14691414 ~ 14694151 (-) True AMCG00012296
AMCG00012287 mRNA downstream 72722 14673333 ~ 14683800 (-) True AMCG00012287
AMCG00012286 mRNA downstream 87835 14666123 ~ 14668687 (-) True AMCG00012286
AMCG00012299 mRNA upstream 206996 14964025 ~ 15050603 (-) True AMCG00012299
AMCG00012301 mRNA upstream 307100 15064129 ~ 15105136 (-) True AMCG00012301
AMCG00012304 mRNA upstream 617320 15374349 ~ 15378863 (-) True AMCG00012304
AMCG00012312 mRNA upstream 1006990 15764019 ~ 15803519 (-) True AMCG00012312
AMCG00012311 mRNA upstream 1107033 15864062 ~ 15874730 (-) True AMCG00012311
TU170709 other downstream 35352 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 153720 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 222250 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 233459 14519830 ~ 14523063 (-) True G135814
TU170164 other downstream 661834 14093242 ~ 14094688 (-) True AMCG00012261
TU170840 other upstream 949905 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 1164575 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 1463097 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 1555692 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 1661163 16418192 ~ 16423900 (-) False AMCG00012340

Expression Profile