RNA id: TU170870


Basic Information

Item Value
RNA id TU170870
length 288
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G135973
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15810796 ~ 15811753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatATTTCCAGTTTACTGCAGATCAGTACACAAGCAAACTGTGACAGCGCTGCAGAGTgagctgaaggagctgcaggagaGCAACACCGCTCAGATATCTGAACTGGGGAAGCAGCTGCAGAACAAGGATAATGAAATCTCCAATCTACAGAGCAGATACAACAGTTTGAATGCCAGCTGTGATGGTTTGTATTCATGTACATGATTAATGGAGACAGGTTAATTaggtcagtggttctcaaccctggtcctagaggAGCCGCTACCCTGATGGTCTTTGTTTCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170843 lncRNA downstream 101571 15706934 ~ 15709225 (-) True G135957
TU170789 lncRNA downstream 303144 15504417 ~ 15507652 (-) True G135913
TU170718 lncRNA downstream 990860 14818855 ~ 14819936 (-) True G135864
TU170713 lncRNA downstream 1053767 14756522 ~ 14757029 (-) True G135859
TU170700 lncRNA downstream 1118877 14673011 ~ 14691919 (-) True G135851
TU170872 lncRNA upstream 1367 15813120 ~ 15816171 (-) True G135975
TU170894 lncRNA upstream 108506 15920259 ~ 15941294 (-) True G135987
TU170938 lncRNA upstream 289056 16100809 ~ 16101090 (-) True G136024
TU170945 lncRNA upstream 315943 16127696 ~ 16161198 (-) True G136029
TU170958 lncRNA upstream 360006 16171759 ~ 16172088 (-) True G136041
AMCG00012312 mRNA downstream 7277 15764019 ~ 15803519 (-) True AMCG00012312
AMCG00012304 mRNA downstream 431933 15374349 ~ 15378863 (-) True AMCG00012304
AMCG00012301 mRNA downstream 705660 15064129 ~ 15105136 (-) True AMCG00012301
AMCG00012299 mRNA downstream 760193 14964025 ~ 15050603 (-) True AMCG00012299
AMCG00012295 mRNA downstream 1056787 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012311 mRNA upstream 52309 15864062 ~ 15874730 (-) True AMCG00012311
AMCG00012315 mRNA upstream 72357 15884110 ~ 15885623 (-) True AMCG00012315
AMCG00012314 mRNA upstream 83336 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012323 mRNA upstream 182010 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012322 mRNA upstream 237701 16049454 ~ 16054218 (-) True AMCG00012322
TU170840 other downstream 78662 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1016638 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 1089626 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 1207994 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 1276524 14531473 ~ 14534272 (-) True AMCG00012281
TU170896 other upstream 109851 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 408373 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 500968 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 606439 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 619599 16431352 ~ 16432813 (-) False AMCG00012340

Expression Profile