RNA id: TU170894


Basic Information

Item Value
RNA id TU170894
length 523
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G135987
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15920259 ~ 15941294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACGGCTTTTTCCCcggtctctccctctctcctcccggCTCCTCGGCTCTGCACAGGCGGCCCGTCCGCTCCGGAGCTCCAGTGACACACAGCCGCCTCCCCCGCCACCATGAGCTCCTGCAGCCTCCGCCTCAGCGCCTcgttttctctctgtctgcggGTTATTTCCACCCGGGACTCCGACACCGTCTCTTCCACCGCCTTCCAGATCTCACACAGGGCGGCTCTCATCAGCTCGGCCAGCGCCGAGGACAGGCGGCCGCTCAGAGCCGCGGACACCGACATTGTCCTTCAGTAcagaataaaatgaagaaatgccATTAACatggattcattttattttctaatcagccacaattttacaaaaatacagacaaaaaacaacaacacggTTGATACTTGTTTTAGCTCCTGAActaattgttgttattgttgttgttgttgcccaCGCTGAACTAAAGCACAAACACGACCCGCCCAAAGTTCGCGGTAAACAAAGATCCAAACAAGAGTCACTTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170872 lncRNA downstream 104088 15813120 ~ 15816171 (-) True G135975
TU170870 lncRNA downstream 108506 15810796 ~ 15811753 (-) True G135973
TU170843 lncRNA downstream 211034 15706934 ~ 15709225 (-) True G135957
TU170789 lncRNA downstream 412607 15504417 ~ 15507652 (-) True G135913
TU170718 lncRNA downstream 1100323 14818855 ~ 14819936 (-) True G135864
TU170938 lncRNA upstream 159515 16100809 ~ 16101090 (-) True G136024
TU170945 lncRNA upstream 186402 16127696 ~ 16161198 (-) True G136029
TU170958 lncRNA upstream 230465 16171759 ~ 16172088 (-) True G136041
TU170991 lncRNA upstream 274107 16215401 ~ 16217071 (-) True G136066
TU171058 lncRNA upstream 341155 16282449 ~ 16291458 (-) True G136112
AMCG00012314 mRNA downstream 13177 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012315 mRNA downstream 34636 15884110 ~ 15885623 (-) True AMCG00012315
AMCG00012311 mRNA downstream 45529 15864062 ~ 15874730 (-) True AMCG00012311
AMCG00012312 mRNA downstream 116740 15764019 ~ 15803519 (-) True AMCG00012312
AMCG00012304 mRNA downstream 541396 15374349 ~ 15378863 (-) True AMCG00012304
AMCG00012323 mRNA upstream 52469 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012322 mRNA upstream 108160 16049454 ~ 16054218 (-) True AMCG00012322
AMCG00012328 mRNA upstream 243105 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012329 mRNA upstream 313981 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012334 mRNA upstream 377341 16318635 ~ 16322600 (-) True AMCG00012334
TU170840 other downstream 188125 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1126101 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 1199089 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 1317457 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 1385987 14531473 ~ 14534272 (-) True AMCG00012281
TU170997 other upstream 278832 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 371427 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 476898 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 490058 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 757348 16698642 ~ 16699110 (-) True G136222

Expression Profile